View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_low_12 (Length: 559)
Name: NF14177_low_12
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 31456620 - 31456095
Alignment:
| Q |
18 |
atgaaagcacaagaagaatatgacacaaaattgtaatgaactcaccactgaaagtattggttttggaaaagctctatcaagtgcatctagaataattcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456620 |
atgaaagcacaagaagaatatgacacaaaattgtaatgaactcaccactgaaagtattggctttggaaaagctctatcaagtgcatctagaataattcct |
31456521 |
T |
|
| Q |
118 |
tgctgttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactgattcctgcagaagattcag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
31456520 |
tgctgttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactgattcctacagaggattcag |
31456421 |
T |
|
| Q |
218 |
aaatgaccgtaaacaacgagaattactggttttagaaatgaattatactaatcggaaaagggatgaattacctgttgctgcttgaacactttttgataaa |
317 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456420 |
aaatgatcgtaaacaacgaaaatgactggttttaaaaatgaattatactaatcggaaaagggatgaattacctgttgctgcttgaacactttttgataaa |
31456321 |
T |
|
| Q |
318 |
tggtttatagctaatttatcaaaccaattatctttgtatacattagtttttcttaatgtttcttctgaaatatcatctgtaggccttgcaagaactccaa |
417 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456320 |
tggtttatagctaatttgtcaaaccaattatctttgtatacattagtttttcttaatgtttcttctgaaatatcatctgtaggccttgcaagaactccaa |
31456221 |
T |
|
| Q |
418 |
ctacaaaagtgtgttttggtttaagtcttagctttttccactgagctaaagttggtgttaggctcatgttagttgcaatcatctttgaatccatttgtga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31456220 |
ctacaaaagtgtgttttggtttaagtcttagcttcttccactgagctaaagttggtgttaggctcatgttatgtgcaatcatctttgaatccatttgtga |
31456121 |
T |
|
| Q |
518 |
gt-gttattgattttcatgtgaaagg |
542 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
31456120 |
gtagttattgattttcatgtgaaagg |
31456095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 38465235 - 38465326
Alignment:
| Q |
116 |
cttgctgttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactgattcctgca |
207 |
Q |
| |
|
|||| |||||| ||| ||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||| |||| ||||||| |
|
|
| T |
38465235 |
cttgttgttgaatagcattaaatttctgttttgccatagtagctgcctcaacaaggctctcatagccactcttattgtttctgagtcctgca |
38465326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 38465387 - 38465455
Alignment:
| Q |
287 |
acctgttgctgcttgaacactttttgataaatggtttatagctaatttatcaaaccaattatctttgta |
355 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
38465387 |
acctgtggcagcttgaactgtttttgataaatggtttattgctatcagatcaaaccagttatctttgta |
38465455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University