View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_low_13 (Length: 553)

Name: NF14177_low_13
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_low_13
NF14177_low_13
[»] chr6 (3 HSPs)
chr6 (17-256)||(30151081-30151318)
chr6 (82-256)||(30035403-30035577)
chr6 (24-161)||(29948407-29948544)
[»] chr8 (1 HSPs)
chr8 (47-256)||(9783688-9783897)
[»] chr5 (1 HSPs)
chr5 (310-363)||(39580865-39580918)
[»] chr3 (2 HSPs)
chr3 (448-524)||(34824248-34824320)
chr3 (483-524)||(19578960-19579000)
[»] chr1 (2 HSPs)
chr1 (448-524)||(1394908-1394980)
chr1 (310-363)||(21252944-21252999)
[»] chr2 (1 HSPs)
chr2 (481-532)||(11084479-11084529)
[»] chr7 (4 HSPs)
chr7 (444-535)||(16197399-16197486)
chr7 (491-524)||(14771026-14771059)
chr7 (491-524)||(15221478-15221511)
chr7 (483-524)||(43369131-43369171)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 30151081 - 30151318
Alignment:
Q  17 aaaagccagtttcttatagcctttgagtgtgatttctttagctagaaaattgcgttgattgcccgattttgtctaactgatcaatatggcttgtgcgaaa 116  Q
    |||| |||||||||||||||||  |||||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||  |||||| |||||||    
T  30151081 aaaaaccagtttcttatagcct--gagtgtgatttcttaagctaggaaaatgtgttgattgcccgattttgtctaactgatcaacctggcttttgcgaaa 30151178  T
Q  117 aagattttgaaaacaatcatgaaagagaaatggcatgaatatgattgaaggtgcttgttggttgtgtgattaatccttagcttgtttctgagtttgattg 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |    
T  30151179 aagattttgaaaacaatcatcaaagagaaatggcatgaatatgattgaaggtgcttgttggttgtatgattaatgcttagtttgtttctgagtttgatgg 30151278  T
Q  217 taaatccgtatttggcttaacactagggaattatttaagg 256  Q
    |||| | |||||||| ||||||||||||| ||||||||||    
T  30151279 taaacctgtatttggtttaacactagggatttatttaagg 30151318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 82 - 256
Target Start/End: Original strand, 30035403 - 30035577
Alignment:
Q  82 attttgtctaactgatcaatatggcttgtgcgaaaaagattttgaaaacaatcatgaaagagaaatggcatgaatatgattgaaggtgcttgttggttgt 181  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30035403 attttgtctaactgatcaacctggcttttgcgaaaaagattttgaaaacaatcatcaaagagaaatggcatgaatatgattgaaggtgcttgttggttgt 30035502  T
Q  182 gtgattaatccttagcttgtttctgagtttgattgtaaatccgtatttggcttaacactagggaattatttaagg 256  Q
     |||||||| ||||| ||||||||||||||||| ||||| | |||||||| ||||||||||||| ||||||||||    
T  30035503 atgattaatgcttagtttgtttctgagtttgatggtaaacctgtatttggtttaacactagggatttatttaagg 30035577  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 29948544 - 29948407
Alignment:
Q  24 agtttcttatagcctttgagtgtgatttctttagctagaaaattgcgttgattgcccgattttgtctaactgatcaatatggcttgtgcgaaaaagattt 123  Q
    |||| ||||||||| ||| ||| |||||||  |||||||| | || |||||||||| |||||||| ||||| |||||  |||||||||| |||||| |||    
T  29948544 agttccttatagccattgtgtgagatttctaaagctagaacaatgtgttgattgccagattttgtgtaactaatcaaactggcttgtgcaaaaaaggttt 29948445  T
Q  124 tgaaaacaatcatgaaagagaaatggcatgaatatgat 161  Q
    ||||||   ||||  |||||||||||||||||||||||    
T  29948444 tgaaaattgtcatccaagagaaatggcatgaatatgat 29948407  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 9783688 - 9783897
Alignment:
Q  47 gatttctttagctagaaaattgcgttgattgcccgattttgtctaactgatcaatatggcttgtgcgaaaaagattttgaaaacaatcatgaaagagaaa 146  Q
    |||||||  ||||||| || || |||||||||| ||||||||||||| ||||| | ||||||||||||||| | || ||||| || |||| |||||  ||    
T  9783688 gatttctaaagctagagaaatgtgttgattgccagattttgtctaac-gatcattctggcttgtgcgaaaagggttctgaaagcagtcatcaaagattaa 9783786  T
Q  147 tggcatgaatatgattgaaggtgcttgttggttgtgtg-attaatccttagcttgtttctgagtttgattgtaaatccgtatttggcttaacactaggga 245  Q
    |||||||||||||||   || |||||| ||||||| || || |||||||||||||||||||| |||||| ||||||| ||||||   ||||||||||| |    
T  9783787 tggcatgaatatgatcacagttgcttgatggttgtatggatgaatccttagcttgtttctgaatttgatggtaaatctgtatttcatttaacactaggaa 9783886  T
Q  246 attatttaagg 256  Q
    |||||||||||    
T  9783887 attatttaagg 9783897  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 39580918 - 39580865
Alignment:
Q  310 tgataggaaactagatataggccttagcccaatagagagtaagatgatattctc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39580918 tgataggaaactagatataggccttagcccaatagagagtaagaagatattctc 39580865  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 524
Target Start/End: Original strand, 34824248 - 34824320
Alignment:
Q  448 atagaaagaaaatgtgcaaaagtatacacttaaactaatttgatgttaatattctaaaactgacacttaaaaaggaa 524  Q
    |||||||||||||||||||||  ||||||||  ||||||||| ||| ||||||||||||| ||||||||||||||||    
T  34824248 atagaaagaaaatgtgcaaaa--atacactt-cactaatttggtgtgaatattctaaaac-gacacttaaaaaggaa 34824320  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 19578960 - 19579000
Alignment:
Q  483 taatttgatgttaatattctaaaactgacacttaaaaaggaa 524  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  19578960 taatttggtgttaatattctaaaac-gacacttaaaaaggaa 19579000  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 524
Target Start/End: Original strand, 1394908 - 1394980
Alignment:
Q  448 atagaaagaaaatgtgcaaaagtatacacttaaactaatttgatgttaatattctaaaactgacacttaaaaaggaa 524  Q
    |||||||||||||||| ||||  |||||||| | |||||||||||| ||||||||||||| ||||||||||||||||    
T  1394908 atagaaagaaaatgtgaaaaa--atacacttca-ctaatttgatgtgaatattctaaaac-gacacttaaaaaggaa 1394980  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 21252944 - 21252999
Alignment:
Q  310 tgataggaaactagatataggccttagcccaat--agagagtaagatgatattctc 363  Q
    |||||||||| ||||||| |||||||| |||||  ||||||||||| |||||||||    
T  21252944 tgataggaaattagatatgggccttaggccaatagagagagtaagaagatattctc 21252999  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 11084479 - 11084529
Alignment:
Q  481 actaatttgatgttaatattctaaaactgacacttaaaaaggaatgaaagga 532  Q
    |||| |||||||||||||||| |||| |||||||||||||||||||||||||    
T  11084479 actattttgatgttaatattccaaaa-tgacacttaaaaaggaatgaaagga 11084529  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 535
Target Start/End: Original strand, 16197399 - 16197486
Alignment:
Q  444 tataatagaaagaaaatgtgcaaaagtatacacttaaactaatttgatgttaatattctaaaactgacacttaaaaaggaatgaaaggagta 535  Q
    |||||||||||||||||||||||||  |||||| |  |||| |||| ||||||| ||||||||  |||||||||||||||||| | ||||||    
T  16197399 tataatagaaagaaaatgtgcaaaa--atacacat-cactattttggtgttaattttctaaaa-agacacttaaaaaggaatggagggagta 16197486  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Complemental strand, 14771059 - 14771026
Alignment:
Q  491 tgttaatattctaaaactgacacttaaaaaggaa 524  Q
    |||||| |||||||||||||||||||||||||||    
T  14771059 tgttaaaattctaaaactgacacttaaaaaggaa 14771026  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 524
Target Start/End: Complemental strand, 15221511 - 15221478
Alignment:
Q  491 tgttaatattctaaaactgacacttaaaaaggaa 524  Q
    |||||| |||||||||||||||||||||||||||    
T  15221511 tgttaaaattctaaaactgacacttaaaaaggaa 15221478  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 43369131 - 43369171
Alignment:
Q  483 taatttgatgttaatattctaaaactgacacttaaaaaggaa 524  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  43369131 taatttggtgttaatattctaaaac-gacacttaaaaaggaa 43369171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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