View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_low_14 (Length: 549)

Name: NF14177_low_14
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_low_14
NF14177_low_14
[»] chr3 (2 HSPs)
chr3 (18-536)||(38718683-38719198)
chr3 (468-536)||(3421584-3421652)
[»] chr1 (3 HSPs)
chr1 (470-536)||(13879577-13879643)
chr1 (466-536)||(30143109-30143179)
chr1 (466-529)||(30157757-30157820)
[»] chr7 (3 HSPs)
chr7 (466-536)||(11320035-11320104)
chr7 (501-536)||(10271021-10271056)
chr7 (502-536)||(39678287-39678321)
[»] chr4 (3 HSPs)
chr4 (470-533)||(10728185-10728248)
chr4 (470-533)||(10941954-10942017)
chr4 (466-533)||(38002721-38002788)
[»] chr8 (1 HSPs)
chr8 (466-536)||(24411019-24411089)
[»] chr5 (1 HSPs)
chr5 (466-536)||(42774102-42774172)
[»] chr6 (1 HSPs)
chr6 (125-169)||(7276864-7276908)


Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 38719198 - 38718683
Alignment:
Q  18 actacatgcaattttgtaccttccactattttttgataaattataaatgatagaaccaataggagttgggtctagtgaaagagactagacattgaacctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38719198 actacatgcaattttgtaccttccactattttttgataaattataaatgatagaaccaataggagttgggtctagtgaaagagactagacattgaacctt 38719099  T
Q  118 gaccgacagatgtattcatatttagtgtctaacatgtctagaatatgattacatttagttgatgggactttgaaccttgagtaatagaggtatccatatt 217  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||   ||||||||||||||||||||||    
T  38719098 gaccgacaaatgtatccatatttagtgtctaacatgtctagaatatgattacatttaattgatgagactttgaac---gagtaatagaggtatccatatt 38719002  T
Q  218 taatgtctgacaggtcttgaatatgattacatttagttgaggggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtctt 317  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38719001 taatgtctgataggtcttaaatatgattacatttagttgagaggacttgtgtaaatgatacccaaaatagcggacataccctagtaattataatggtctt 38718902  T
Q  318 accttgatgagtacatcaacaacctcagtgaatcctctgcaacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718901 accttgatgagtacatcaacaacctcagtgaatcctctgcaacaagcagagacaagggcatgtattgcaacatgaggacggatcatgttggattgcatca 38718802  T
Q  418 gtagttcagcaaatcttgcatgtcccacatagcttgcttcaagtaaagcctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38718801 gtagttcagcaaatcttgcatgtcccacatagcttgcttcaagtaaagcctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatat 38718702  T
Q  518 tttcaaatggccttccctc 536  Q
    |||||||||||||||||||    
T  38718701 tttcaaatggccttccctc 38718683  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 3421652 - 3421584
Alignment:
Q  468 tcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 536  Q
    |||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||| |||||||||    
T  3421652 tcttcagatgcaagttgtgatgttccaccattgataaggacctccaatattttcaaatgaccttccctc 3421584  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 13879577 - 13879643
Alignment:
Q  470 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 536  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13879577 ttcacatgcaagttgtgacgccccaccattgataaggatctccaatattttcaaatggccttccctc 13879643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 466 - 536
Target Start/End: Complemental strand, 30143179 - 30143109
Alignment:
Q  466 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 536  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  30143179 cctcttcgcatgcaagttgtgacgctccaccattgataatgacctccaatattttcaaatggcctaccctc 30143109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 466 - 529
Target Start/End: Complemental strand, 30157820 - 30157757
Alignment:
Q  466 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggcc 529  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||    
T  30157820 cctcttcacatgcaagttgtgacgctccaccattgataataacctccaatattttcaaatggcc 30157757  T

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Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 466 - 536
Target Start/End: Complemental strand, 11320104 - 11320035
Alignment:
Q  466 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 536  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  11320104 cctcttcacatgcaagttgtga-gtcccaccattgataaggacctccaatattttcaaatggccttccctc 11320035  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 536
Target Start/End: Complemental strand, 10271056 - 10271021
Alignment:
Q  501 ataaggacctccaatattttcaaatggccttccctc 536  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10271056 ataaggacctctaatattttcaaatggccttccctc 10271021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 536
Target Start/End: Original strand, 39678287 - 39678321
Alignment:
Q  502 taaggacctccaatattttcaaatggccttccctc 536  Q
    ||||||| |||||||||||||||||||||||||||    
T  39678287 taaggacttccaatattttcaaatggccttccctc 39678321  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 470 - 533
Target Start/End: Original strand, 10728185 - 10728248
Alignment:
Q  470 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 533  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10728185 ttcacatgtaagttgtgacgccccaccattgataaggacctccaatattttcaaatggtcttcc 10728248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 470 - 533
Target Start/End: Original strand, 10941954 - 10942017
Alignment:
Q  470 ttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 533  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10941954 ttcacatgtaagttgtgacgccccaccattgataaggacctccaatattttcaaatggtcttcc 10942017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 466 - 533
Target Start/End: Original strand, 38002721 - 38002788
Alignment:
Q  466 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttcc 533  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  38002721 cctcttcacatgcaagttgtgacaccccaccattgataaggacctccaatattttaaaatggtcttcc 38002788  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 466 - 536
Target Start/End: Original strand, 24411019 - 24411089
Alignment:
Q  466 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 536  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  24411019 cctcttcacatgcaatttgtgactcctcaccattgataaggacctccaatattttcaattggccttccctc 24411089  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 466 - 536
Target Start/End: Complemental strand, 42774172 - 42774102
Alignment:
Q  466 cctcttcacatgcaagttgtgacgccccaccattgataaggacctccaatattttcaaatggccttccctc 536  Q
    ||||||||||||||||||||||| | |||| |||||||| ||||| |||||||||||||||||||||||||    
T  42774172 cctcttcacatgcaagttgtgacactccactattgataaagacctgcaatattttcaaatggccttccctc 42774102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 7276864 - 7276908
Alignment:
Q  125 agatgtattcatatttagtgtctaacatgtctagaatatgattac 169  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  7276864 agatgtattcatatttagtgtctgacatgtcttgaataagattac 7276908  T

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