View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_15 (Length: 543)
Name: NF14177_low_15
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 38582252 - 38582788
Alignment:
| Q |
1 |
ttgaacatttgaacctggtccagtgttagcatactcagcaaagaaacatgtatcaaggaattgagtccctgcccaaggaagaaatccatctggttgaatt |
100 |
Q |
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| T |
38582252 |
ttgaacatttgaacctggtccagtgttagcatactcagcaaagaaacatgtatcaaggaattgagtccctgcccaaggaagaaatccatctggttgaatt |
38582351 |
T |
|
| Q |
101 |
aaatcaccaatggtattttccataaatattgccctagaatatgccttccatggtcttgctaaaaacgatcgaaccttcaatctatcaggttgtagtgctg |
200 |
Q |
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| T |
38582352 |
aaatcaccaatggtattttccataaatattgccctagaatatgccttccatggtcttgctaaaaacgatcgaaccttcaatctatcaggttgtagtgctg |
38582451 |
T |
|
| Q |
201 |
gctctggcatgatttcacaattctgaagtactactcctgttggcatgttcttttggactgtgccatcagctacaattatgtgttgttgatttggctcggg |
300 |
Q |
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| T |
38582452 |
gctctggcatgatttcacaattctgaagtactactcctgttggcatgttcttttggactgttccatcagctacaattatgttttgttgatttgcctcggg |
38582551 |
T |
|
| Q |
301 |
ttttcgcactactatctttgagttctgtattactgttgatgcatagccgaaaatgaaatccactgtgcctgaaatttcgcagtttctgtagaattgacgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582552 |
ttttcgcactactatctttgagttctgtattactgttgatgcatagccgaaaatgaaatccactgtgcctgaaatttcgcagtttctgtagaattgacgg |
38582651 |
T |
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| Q |
401 |
tgggcgtgtgcgtacaatgtgtcttggtaagctcgtatggcacaatcgaagaaagctgatttatcgccttgcacgcgaagtgctactgcttggtgtttgt |
500 |
Q |
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| T |
38582652 |
tgggcgtgtgcgtacaatgtgtcttggtaacctcgtatggcacaatcgaagaaagctgatttatcgccttgcacgcgaagtgctactgcttggtgtttgt |
38582751 |
T |
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| Q |
501 |
ttgctccggctgtgttctcaaatgccattgcctttgc |
537 |
Q |
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| T |
38582752 |
ttgctccggctgtgttctcaaatgccattgcctttgc |
38582788 |
T |
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