View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_16 (Length: 520)
Name: NF14177_low_16
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Complemental strand, 22574011 - 22573520
Alignment:
| Q |
19 |
atcaagatcaatttccaccaattgatttgagaaagtatttgccaccgatgaggtatgtgaccaagaaacggagctggaattatgttaatgacgttgaagc |
118 |
Q |
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| T |
22574011 |
atcaagatcaatttccaccaattgatttgagaaagtatttgccaccgatgaggtatgtgaccaagaaacggagctggaattatgttaatgacgttgaagc |
22573912 |
T |
|
| Q |
119 |
tgatgttgctgaagcaatgttggacatgtcagagcgatcacctaacaaccttgatgggaatcaccgtgtcaggagaaggatcaaacttcgccgcaatgtg |
218 |
Q |
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| T |
22573911 |
tgatgttgctgaagcaatgttggacatgtcagagcgatcacctaacagccttgatgggaatcaccgtgtcaggagaaggatcaaacttcgccgcaatgtg |
22573812 |
T |
|
| Q |
219 |
gataagaatgggaagatcaaagaacaaggtggtgtgctggtaaaacattgtgttgatgaaacaattgtgagagatcaaaagaacaaggtggtggcgaggt |
318 |
Q |
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| T |
22573811 |
gataagaatgggaagatcaaagaacaaggtggtgtgctggtaaaacattgtgttgatgaaacaattgtgagagatcaaaagaacaaggtggtggcgaggt |
22573712 |
T |
|
| Q |
319 |
taaagattccgaatggcctagtcattcaaaattcacaagcttccaatcaacctgcctccaatgatgataatgaagagaacaacaacactggtgaagatga |
418 |
Q |
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| T |
22573711 |
taaagattccgaatggcctagtcattcaaaattcacaagcttccaatcaacctgcctccaatgatgataatgaagagaacaacaacactggtgaagatga |
22573612 |
T |
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| Q |
419 |
tgaaacagatgagaacaacaacctgcctcatgaattagggttaaatgttgttcgagatttcgatttgaatgagctgccagtggatgatgatg |
510 |
Q |
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| T |
22573611 |
tgaaacagataagaacaacaacctgcctcatgaattagggttaaatgttgttcgagatttcgatttgaatgagctgccagtggaagatgatg |
22573520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 22564456 - 22564222
Alignment:
| Q |
23 |
agatcaatttccaccaattgatttgagaaagtatttgccaccgatgaggtatgtgaccaagaaacggagctggaattatgttaatgacgttgaagctg-- |
120 |
Q |
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|||||| |||||||| |||||||| | ||||||||||||||| || ||||| | ||||||||||||||||||| ||||| || ||| |||||| ||| |
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| T |
22564456 |
agatcagtttccacccattgatttaacaaagtatttgccaccaataaggtacgagaccaagaaacggagctgggattattttcttgatgttgaaactgtt |
22564357 |
T |
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| Q |
121 |
-atgttgctgaagcaatgttggacatgtcagagcgatcacctaacaaccttgatgggaatcaccgtgtcaggagaaggatcaaacttcgccgcaatgtgg |
219 |
Q |
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| T |
22564356 |
aacgttgctgaaataatggtggatatgtctcagcaatcatctgccaatcttaatgtgaatcaccgtgacaataaaagaatgaaactttgcagcagtgtcg |
22564257 |
T |
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| Q |
220 |
ataagaatgggaagatcaaagaacaaggtggtgtg |
254 |
Q |
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|| | ||| ||||||||| ||||||||||||||| |
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| T |
22564256 |
atgatgatgagaagatcaatgaacaaggtggtgtg |
22564222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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