View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_17 (Length: 514)
Name: NF14177_low_17
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 503
Target Start/End: Original strand, 3273960 - 3274451
Alignment:
| Q |
16 |
gattgcccttgttaaatcgattccatcggtgttgtgactttcttttggtgaattaatatgaatatgggagatagttacgtcttggctatccgtcaccgca |
115 |
Q |
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| T |
3273960 |
gattgcccttgttaaatcgattccatcggtgttgtgactttcttttggtgaattaatatgaatatgggagatagttatgtcttggctatccgtcaccgca |
3274059 |
T |
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| Q |
116 |
atatgtggtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacatttatcaaactgcaaagcctgcgtatcaaacattgcaattattg |
215 |
Q |
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| T |
3274060 |
atatgtggtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacatttatcaaactgcaaagcctgcgtatcaaacattgcaattattg |
3274159 |
T |
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| Q |
216 |
agaaaaatatatttcaattcgtgatttgtttgatgagaatttctattatataaatcatcacaatggtaagaatttctaaccgttggtattctagggcatt |
315 |
Q |
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| T |
3274160 |
agaaaaatatatttcaattcgtgatttgtttgatgagaatttctattatataaatcatcacaatggtaagaatttctaaccgttggtattctagggcatc |
3274259 |
T |
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| Q |
316 |
ctccagtccctttcacctgcaagtttaaaatagtgtattgtttgatgattaatgttacggataacgattaacaccaaaaacaaaaatgctacaaataatg |
415 |
Q |
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| T |
3274260 |
ctccagtccctttcacctgcaagtttaaaatagtgtattgtttgatgattaatgttacagataacgattaacaccaaaaacaataatgctacaaataatg |
3274359 |
T |
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| Q |
416 |
actgc----aannnnnnnnnnnnnaacaatagtgtgctaaatcatagtaggtgattaataagaaaaatgtaaataacggttcctgtttcttc |
503 |
Q |
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| T |
3274360 |
attgcaaaaaatttgattttttttaccaatagtgtgctaaatcatagtaggtgattaataagaaaaatgtaaataacggttcctgtttcttc |
3274451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 3279183 - 3279353
Alignment:
| Q |
23 |
cttgttaaatcgattccatcggtgttgtgactttcttttggtgaattaatatgaatatgggagatagttacgtcttggctatccgtcaccgcaatatgtg |
122 |
Q |
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||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||| ||||||| |
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| T |
3279183 |
cttgttaaatcaatcccatcagtgttgtgacttttttttggtgaattaatatgaatatgtgagatagttatatcttgactatcgatcaccgcgatatgtg |
3279282 |
T |
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| Q |
123 |
gtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacatttatcaaactgcaaagcctgc |
193 |
Q |
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| T |
3279283 |
ctcctggaccattgatatgggtgagtccatttatttgaagtccgtcacatttatcgaactgtaaagcctgc |
3279353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 3279469 - 3279549
Alignment:
| Q |
282 |
taagaatttctaaccgttggtattctagggcattctccagtccctttcacctgc-aagtttaaaatagtgtattgtttgat |
361 |
Q |
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| T |
3279469 |
taagagtttctaaccgttggtattctagggcatcctccaattcctttctcctgcaaattttaaaatcgtgtattgtttgat |
3279549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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