View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_low_18 (Length: 510)
Name: NF14177_low_18
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 24877739 - 24877261
Alignment:
| Q |
1 |
tatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24877739 |
tatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
24877640 |
T |
|
| Q |
101 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24877639 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
24877540 |
T |
|
| Q |
201 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24877539 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtctagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
24877440 |
T |
|
| Q |
301 |
acactggaaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24877439 |
acactgggaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagctacatgtcaaataagtggctttgtt |
24877340 |
T |
|
| Q |
401 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24877339 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
24877261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 24594855 - 24594794
Alignment:
| Q |
397 |
tgttgattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttca |
458 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||| | || | |||||||||||||||||||||| |
|
|
| T |
24594855 |
tgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttca |
24594794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 14089009 - 14088531
Alignment:
| Q |
1 |
tatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14089009 |
tatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
14088910 |
T |
|
| Q |
101 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14088909 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
14088810 |
T |
|
| Q |
201 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14088809 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtctagacattttacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
14088710 |
T |
|
| Q |
301 |
acactggaaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14088709 |
acactgggaagcagtgaaatggattttgaggtacttaaatggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
14088610 |
T |
|
| Q |
401 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14088609 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
14088531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 1472828 - 1472767
Alignment:
| Q |
397 |
tgttgattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttca |
458 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||| | || | |||||||||||||||||||||| |
|
|
| T |
1472828 |
tgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttca |
1472767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 33697686 - 33698164
Alignment:
| Q |
1 |
tatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33697686 |
tatggagattagtagagagaggacaaaccggaaactgttcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
33697785 |
T |
|
| Q |
101 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33697786 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactaaagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
33697885 |
T |
|
| Q |
201 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33697886 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtcaagacatttaacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
33697985 |
T |
|
| Q |
301 |
acactggaaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33697986 |
acactgggaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
33698085 |
T |
|
| Q |
401 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33698086 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
33698164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 46457476 - 46457954
Alignment:
| Q |
1 |
tatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
46457476 |
tatggagattagtagagagaggacaaactagaaactgttcttgagtcaaaaaggctatttatagcgggttgttgaaaggtttgtaatgtaaggttctaag |
46457575 |
T |
|
| Q |
101 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46457576 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactaaagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
46457675 |
T |
|
| Q |
201 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46457676 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
46457775 |
T |
|
| Q |
301 |
acactggaaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46457776 |
acactgagaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
46457875 |
T |
|
| Q |
401 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
46457876 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacagtgctccagtaa |
46457954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 9952772 - 9953249
Alignment:
| Q |
1 |
tatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttgttgaaaggtttggaatgaaaggttctaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9952772 |
tatggagattagtagagagaggacaaaccagaaactattcttgagtcaaaaaggctatttagagcgggttttcgaaaggtttggaatgaaaggttctaag |
9952871 |
T |
|
| Q |
101 |
tcggtggttactccattagctccacattttagactttctggtaatcagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9952872 |
tcggtggttactccattagctccacattttagactttttggtaattagtctcccactacagcagaagataaggaaaacatgaaaaatgtaccttatgcta |
9952971 |
T |
|
| Q |
201 |
gtgcagttggcagtttgatgtatgctatggtgtgtacacgtccagacatttcacaagcggtaagtgttgttagtagattcatggcaaatccaggaaaggc |
300 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9952972 |
gtgcagttggtagtttaatgtatgctatggtgtgtacacgtccacacatttcacaagtggtaagtgttgttagtagattcatggcaaatctaggaaaggc |
9953071 |
T |
|
| Q |
301 |
acactggaaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagatacatgtcaaataagtggctttgtt |
400 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
9953072 |
acacttggaagcagtgaaatggattttgaggtacttaaaaggtaccattaacactggtttgtgttttggtggagat-catgtcaattaagtggctttgtt |
9953170 |
T |
|
| Q |
401 |
gattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttcaaaatacacggtgctccagtaa |
479 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9953171 |
gattcggattatgctggtaatctagatagacgacggtgtactactggttatgtgttcaaaatacacggtgctccagtaa |
9953249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 7505127 - 7505066
Alignment:
| Q |
397 |
tgttgattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttca |
458 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||| | || | |||||||||||||||||||||| |
|
|
| T |
7505127 |
tgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttca |
7505066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 2002836 - 2002897
Alignment:
| Q |
397 |
tgttgattcggattatgctggtgatctagatagacgacggtctactactggttatgtgttca |
458 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||| | || | |||||||||||||||||||||| |
|
|
| T |
2002836 |
tgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttca |
2002897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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