View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_19 (Length: 494)
Name: NF14177_low_19
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 33947934 - 33948398
Alignment:
| Q |
12 |
ccaagaatatactataattaatgatagcaaggaaaacaattggtagtctagtaaaggctgctccttctaaaaaccagtctagtccttcactcaaaagtca |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33947934 |
ccaagaaaatactataattaatgatagcaaggaaaacaattggtagtctagtaaaggctgctccttctaaaaaccagtctagtccttcactcaaaagtca |
33948033 |
T |
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| Q |
112 |
atctttcccactcatacccccctctttcctctatccttccccacttcccttctctatataatcaccccttcacattccaaccgacacccattttccattt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948034 |
atctttcccactcatacccccctctttcctctatccttccccacttcccttctctatataatcaccccttcacattccaaccgacacccattttccattt |
33948133 |
T |
|
| Q |
212 |
ccaccatagcaactgtttggtttggaatttggttccacaaacaagcatggaggttgttctaccagttgcaccacctactcctccaatagacttcaacttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33948134 |
ccaccatagcaactgtttggtttggaatttggttccacaaacaaacatggaggttgttctaccagttgcaccacctactcctccagtagacttcaacttc |
33948233 |
T |
|
| Q |
312 |
gacagtaactgttcctctccttacatcactgctccttcttcccctcaacgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgttt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33948234 |
gacagtaactgttcctctccttacatcactgctccttcttcccctcaacgctttgccaacaacttcttcttcagtgctcctaccagcccctctcgtgttt |
33948333 |
T |
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| Q |
412 |
cacctcttttctctgaatcctctcttccttttcatcaagaaaccaaactcaacaaccaccataac |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33948334 |
cacctcttttctctgaatcctctcttccttttcatcaagaaaccaaacccaacaaccaccataac |
33948398 |
T |
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