View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_20 (Length: 485)
Name: NF14177_low_20
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 44409469 - 44409922
Alignment:
| Q |
17 |
agttgaatctctgaaagcagtaaaatacattgattctgaacacttcacagtaccagaaggaaaaagagcaattgaacttgtagcaggaaaagaaagtgca |
116 |
Q |
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| T |
44409469 |
agttgaatctctgaaagcagtaaaatacattgattctgaacacttcacagtaccagaaggaaaaagagcaattgaacttgtagcaggaaaagaaagtgca |
44409568 |
T |
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| Q |
117 |
cttgcacaagaagtattcacaacaattggaaaagtttatgtcctcacttttgcagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaag |
216 |
Q |
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| T |
44409569 |
cttgcacaagaagtattcacaacaattggaaaagtttatgtcctcacttttgcagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaag |
44409668 |
T |
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| Q |
217 |
catttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtac |
316 |
Q |
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| T |
44409669 |
catttgctggtagagacactgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtac |
44409768 |
T |
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| Q |
317 |
taggattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgt |
416 |
Q |
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| T |
44409769 |
taggattaggttcctaagtacattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgt |
44409868 |
T |
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| Q |
417 |
tatcccaacaaccatacctaagtagtatatatgctgcaaatcaaaatgctaccttcat |
474 |
Q |
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| T |
44409869 |
tatcccaacaaccatacctaagtag----tatgctgcaaatcaaaatgctaccttcat |
44409922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
368 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
409 |
Q |
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| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 2287164 - 2287260
Alignment:
| Q |
30 |
aaagcagtaaaatacattgattctgaacacttcacagtaccagaaggaaaaagagcaattgaacttgtagcaggaaaagaaagtgcacttgcacaag |
126 |
Q |
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| T |
2287164 |
aaagcagtaaaatacctagactcagctcatttctcagttccacaaggcacaagagcagttgaactagtggcaggaaaagaaagtgcaatagcacaag |
2287260 |
T |
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