View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_21 (Length: 484)
Name: NF14177_low_21
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Original strand, 50595170 - 50595619
Alignment:
| Q |
19 |
atccaatgcatcaccataacaacccattctcccatacccagttatcatagtcgtccaagacacaattgtcctaacaggcatgtcatcaaacagttccctt |
118 |
Q |
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| T |
50595170 |
atccaatgcatcaccataacaacccattctcccatacccagttatcatagtcgtccaagacacaattgtcctaacaggcatgtcatcaaacagttccctt |
50595269 |
T |
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| Q |
119 |
gccctattcatctgccccaatttcacatacccaaatatcaaactattccaagaaatcacatctctatgactcatttcctcaaataccttgcacgcattgg |
218 |
Q |
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| T |
50595270 |
gcactattcatctgccccaatttcacatacccaaatatcaaactattccaagaaatcacatctctatgactcatttcctcaaataccttgcacgcattgg |
50595369 |
T |
|
| Q |
219 |
ttaaatccccaaattttgtatacatatcaatcaacgcattctcggttatacagtgagaatcagctccaaatttgtaaactagcccatgaacctgcatacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50595370 |
ttaaatccccaaattttgtatacatatcaatcaacgcattctcggttatacagtgaaaatcagctccaaatttgtaaactagcccatgaacctgcatacc |
50595469 |
T |
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| Q |
319 |
aagccggtgacacagaattcccgtgcatgatttaatcacaaaagggaacgtgaatttgtctggaaaaactgaatttgttgaatgtgtgagcatttgaatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50595470 |
aagccggtgacacagaattcccgtgcatgatttaatcacaaaagggaacgtgaatttgtctggaaaaactgaatttgttgaatgtgtgagcatttgaacg |
50595569 |
T |
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| Q |
419 |
aagacagagattgccgaagaatggtggcgattgtgagcgtaggttctgat |
468 |
Q |
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| T |
50595570 |
aagacagagattgctgaagaatggtggcgattgtgagcgtaggttctgat |
50595619 |
T |
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