View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_27 (Length: 445)
Name: NF14177_low_27
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Complemental strand, 9013005 - 9012583
Alignment:
| Q |
9 |
gaagaatatatagacatatcggtcattaaagaagcaaggttaaattaaattccatattatgaatcaatcggtacgattttctttccg-tatcgtttcagc |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
9013005 |
gaagaaaatatagacatatcggtcattaaagaagcaaggttaaattaaattccatattatgaatcaatcggtacgattttcttccccatatcgtttcagc |
9012906 |
T |
|
| Q |
108 |
ttttcattccatattcttaaagatatctgcattaacttagaannnnnnnnaaataaataagcctttttaaaagcttatatttccattaatgaagacaaac |
207 |
Q |
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| T |
9012905 |
ttttcattccatattcttaaagatatctacattaacttaga-tattttttaaataaataagcctttttaaaagcttatatttccattaatgaagacaaac |
9012807 |
T |
|
| Q |
208 |
ttacatcgccaaatgtacaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaatccatattcataaagatatttcgatccttttttct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9012806 |
ttacatcgccaaatgtacaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaatccatattcataaagatatttcgatcctttttcct |
9012707 |
T |
|
| Q |
308 |
-aagaacacatttgcattaactcaaatattttctatataactaacccttctaataagcttctcatcacatcaaaaccacaaagacataatttgcgatact |
406 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9012706 |
aaagaacacatttgcattaacacaaatattttctatataatgaactcttctaataagcttctcatcacatcaaaaccacaaagacatagtttgcgatact |
9012607 |
T |
|
| Q |
407 |
tactttgcatcatggcatccaaat |
430 |
Q |
| |
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| T |
9012606 |
tactttgcatcatggcatccaaat |
9012583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 9021016 - 9020585
Alignment:
| Q |
16 |
atatagacatatcggtcattaaagaa-gcaaggttaaattaaattccatattatgaatcaatcggtacgattttcttt-ccgtatcgtttcagcttttca |
113 |
Q |
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|||||||||||| |||||||| || |||| |||||||| ||| ||| |||||||||||||||||||||||||||| || ||| || | ||||| |
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| T |
9021016 |
atatagacatattattcattaaaaaaagcaaagttaaatttaatcccaaattatgaatcaatcggtacgattttcttcaccatat----tcggattttct |
9020921 |
T |
|
| Q |
114 |
ttccatattcttaaagatatctgcattaacttagaannnnnnnnaaataaataagcctttttaaaagcttatatttccattaatgaagacaaacttacat |
213 |
Q |
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||||||||||||||||||| |||||| ||| | || |||||||||| | || ||||||||| || |||||||||||||||||||| |||||| |
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| T |
9020920 |
atccatattcttaaagatatttgcattgactaa-aatattttttaaataaataaactttcttaaaagctaatctttccattaatgaagacaaaattacat |
9020822 |
T |
|
| Q |
214 |
cgccaaat---------------------gtacaaatcaatcggtgtaatattttttctcacgtcgtttcaaatttttaatccatattcataaagatatt |
292 |
Q |
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| T |
9020821 |
cgccaaattaggaagcaagagatattcatgcacaaatcaatcggtgtaatattttttctaacatcgtttcaaatttttaatccatattcataaagatatt |
9020722 |
T |
|
| Q |
293 |
tcgatccttttttctaagaacacatttgcattaactcaaatattttctatataactaacccttctaataagcttctcatcacatcaaaaccacaaagaca |
392 |
Q |
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||||||||| | ||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| | || || |
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| T |
9020721 |
tcgatccttatcctaaagaacatatttgcattgactcaaatattttctatataattaacccttctgataagcttctcatcatatcaaaacc-tataggca |
9020623 |
T |
|
| Q |
393 |
taatttgcgatacttactttgcatcatggcatccaaat |
430 |
Q |
| |
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|| |||||||||||||||||| | ||| ||||||||| |
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| T |
9020622 |
tagtttgcgatacttactttgtaccataacatccaaat |
9020585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 1744030 - 1744082
Alignment:
| Q |
316 |
atttgcattaactcaaatattttctatataactaacccttctaataagcttct |
368 |
Q |
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|||||||||||||||| |||||||| |||| |||||||||| |||||||||| |
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| T |
1744030 |
atttgcattaactcaacaattttctaaataaataacccttcttataagcttct |
1744082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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