View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_33 (Length: 386)
Name: NF14177_low_33
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 3274798 - 3274428
Alignment:
| Q |
16 |
tactaacaataaaaatagaacatgtattgtctgtgcctaattatcaagtttaaaggtccaatttcaaattaaatttgatatttgaaattataaaataaat |
115 |
Q |
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| T |
3274798 |
tactaacaataaaaatagaacatgtattgtctgtgcctaattatcaagtttaaaggtccaatttcaaattaaatttgatatttgaaattataaaataaat |
3274699 |
T |
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| Q |
116 |
atcaatatannnnnnnggatgtgtgaatgtgtaatcccttaccggatgaaatctgaattcaatgattggtttgatgatggaggcttgagacatcatagta |
215 |
Q |
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| T |
3274698 |
atcaatatatttttttggatgtgtgaatgtgtaatcccttgccggatgaaatctgaattcaatgattggtttgatgatggaggcttgagacatcatagta |
3274599 |
T |
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| Q |
216 |
tacgtatctctaggacttgagttcgaatcttccatatatcaattcttgtgttgtgttagatcatacataaatttgctccaactcagatgaattcatcact |
315 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
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| T |
3274598 |
tacgtatctctaggactggagttcgaatcttccatatgtcaattcttgtgttgtgttagatcatacataattttgctccgactcagttgaattcatcact |
3274499 |
T |
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| Q |
316 |
aatatactatgagattgttcttcagatgaaaaaatttctccacaaaagaagaaacaggaaccgttatttac |
386 |
Q |
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| T |
3274498 |
aatatactatgagattgttcttcagatgaaaaaattactccacaaaagaagaaacaggaaccgttatttac |
3274428 |
T |
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