View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_34 (Length: 385)
Name: NF14177_low_34
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 4 - 370
Target Start/End: Original strand, 27821535 - 27821902
Alignment:
| Q |
4 |
cataggagtgtagacaagaagattttcaagataagagctctttgcttttagagatgaacccggtttacaaaatgataccggttttagttcataatggaaa |
103 |
Q |
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| T |
27821535 |
catatgagtgtagacaagaagattttcaagataaaagctctttgcttttagagatgaacccggtttacaaaatgataccggttttggttcataatggaaa |
27821634 |
T |
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| Q |
104 |
acctatatgtgaatcacttaatatagttgagtacattgatgaagcttggaaccaaaaaccttctcttttgccctctgacccttacaaacgatcacaagcc |
203 |
Q |
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| T |
27821635 |
acctatatgtgaatcacttaatatagttgagtacattgatgaagcttggaaccaaaaaccttctcttttgccctcggacccttacaaacgatcacaagcc |
27821734 |
T |
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| Q |
204 |
aagttttggggagattacattgacaaacatgtaagttacttacattactatgtgtgttattatttttggttagtcgtgctattggtgtgaagtatccagc |
303 |
Q |
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| T |
27821735 |
aagttttggggagattacattgacaaacatgtaagttacttacattactatgtgtgttattatttttggttagtcgtgctattggtgtgaagtatccagc |
27821834 |
T |
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| Q |
304 |
acctttgtcagactaatttccgccggag-ttatagctagccacttttagtgggtttccactctcaact |
370 |
Q |
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| T |
27821835 |
acctttgtcagactaatttccgccggagattatagctagccacttttagtgggtttccactctcaact |
27821902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 27824523 - 27824752
Alignment:
| Q |
12 |
tgtagacaagaagattttcaagataagagctctttgcttttagagatgaacccggtttacaaaatgataccggttttagttcataatggaaaacctatat |
111 |
Q |
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| T |
27824523 |
tgtagacaagaagattttcaagataaaagctctatgcttttagagatgaacccggtttacaaaatgataccggttttggttcataatggaaaacctatat |
27824622 |
T |
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| Q |
112 |
gtgaatcacttaatatagttgagtacattgatgaagcttggaaccaaaaaccttctcttttgccctctgacccttacaaacgatcacaagccaagttttg |
211 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
27824623 |
gtgaatcacttaatatagttgaatacattgatgaagcttggaatcacaaaccttctcttttgcccttagacccttacaagcgatcacaagctaagttttg |
27824722 |
T |
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| Q |
212 |
gggagattacattgacaaacatgtaagtta |
241 |
Q |
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| T |
27824723 |
gggagattacattgacaaacatgtaagtta |
27824752 |
T |
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