View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_35 (Length: 383)
Name: NF14177_low_35
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 21829622 - 21829295
Alignment:
| Q |
18 |
ctttaaagggaggagtctattgattatctaggttataggacactatggctgggatcaaatgtgaaggtagaatcgtcatcaatccatcacggggttagtt |
117 |
Q |
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| T |
21829622 |
ctttaaagggaggagtctattggttatctaggttataggacactatgtctgggatcaaatgtgaaggtagaatcgtcatggatccatcacggggttagtt |
21829523 |
T |
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| Q |
118 |
tcaattttagtttggaggtgatgataaaattgttcttttgtcaatcaaatggggctaggtattgccaacaaaagagctgattattactagaaatcgagtg |
217 |
Q |
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| T |
21829522 |
tcaattttagtttggaggtgatgacaaaattgttcttttgtcaatctaatggggctaggtgttgccaacaaaagagctgattattactagaaatcgagtg |
21829423 |
T |
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| Q |
218 |
ttgaccattagatatcatgaaatatttggtgatgaaacataggaaagtttcccactgacgataccaaatagtccaatgggactagagaggtacgacctga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21829422 |
ttgaccattagatatcatgaaatatttggtgatgaaacataggaaagtttcccacagacgatgccaaatagtccaatgggactagagaggtacgacctga |
21829323 |
T |
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| Q |
318 |
gcattattgatgatgggacatcatatga |
345 |
Q |
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|||| | ||||||||||| ||||||||| |
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| T |
21829322 |
gcatgactgatgatgggatatcatatga |
21829295 |
T |
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