View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_37 (Length: 362)
Name: NF14177_low_37
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 24145581 - 24145925
Alignment:
| Q |
17 |
caaaggtaaggttattagactttggagagtttctgatttcaataggaatagtttgcccttttcaaccatcaa--------------------ccatcaat |
96 |
Q |
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| T |
24145581 |
caaaggtaaggttattagactttggagagtttctgatttcaataggaatagtttgcccttttcaaccatcaatggtaaaacttgctcatcaaccatcaat |
24145680 |
T |
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| Q |
97 |
gtagtgttgcctgaagtatttcgacatatctctaactttttatatgtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtat |
196 |
Q |
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| T |
24145681 |
gtagtgttgcctgaagtatttcgacatatctctaactttttat--gtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtat |
24145778 |
T |
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| Q |
197 |
atggggccttagcataccacataaatcaagacatttttatggaagttctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatacatc |
296 |
Q |
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| T |
24145779 |
atggggccttagcataccacagaaatcaagacatttttatggaggttctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatacatc |
24145878 |
T |
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| Q |
297 |
tgcagatatggaggaaggaataccattgacgtgttctttgatataat |
343 |
Q |
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| T |
24145879 |
tgcagatatggaggaatgaataccattgacgtgttctttgatataat |
24145925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 293
Target Start/End: Original strand, 24150639 - 24150829
Alignment:
| Q |
116 |
ttcgacatatctctaactttt-tatatgtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtatatggggccttagcatacc |
214 |
Q |
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| T |
24150639 |
ttcgacacatctttaactcttgtatatgggtcaaagaggcatccaaggaatctcaaagcaaagaaaaatagtttccttgtatatggggccttagcatacc |
24150738 |
T |
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| Q |
215 |
acataaatc-------aagacatttttatggaagt-----tctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatac |
293 |
Q |
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| T |
24150739 |
acagaaatcaagagtgaagacatttttatggaggttttaatttgtcgcaatgtttttctcacctgagatcaacttcgacggagaggtatac |
24150829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 342
Target Start/End: Original strand, 24150940 - 24150974
Alignment:
| Q |
308 |
aggaaggaataccattgacgtgttctttgatataa |
342 |
Q |
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| T |
24150940 |
aggaatgaataccattgacgtgttctttgatataa |
24150974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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