View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_low_4 (Length: 715)
Name: NF14177_low_4
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Complemental strand, 54985975 - 54985440
Alignment:
| Q |
17 |
atacagattcagcatccaatatcacctcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaat-----aagtgaatgtagtc |
111 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54985975 |
atacagattcagcatcctatatcaactcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgtagtc |
54985876 |
T |
|
| Q |
112 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985875 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
54985776 |
T |
|
| Q |
212 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985775 |
caagcaagaattttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
54985676 |
T |
|
| Q |
312 |
aacatgcccaattgtatgtgccacagcaacctgcagtttaaattct-cattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985675 |
aacatgcccaattgtatgtgccacagcaacctgcagtttaaattctccattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttga |
54985576 |
T |
|
| Q |
411 |
tgcaaaagtctcatattctagttttagtatagtctatgtttggctacaatttcggagaggaaaaaattaattctagaactaacatagtgtggcacattta |
510 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985575 |
tgcaaaagtctcatattctagctttaatatagtctatgtttggctacaatttcggagaggaaaaaattaattctagaactaacatagtgtggcacattta |
54985476 |
T |
|
| Q |
511 |
gaagataaatgtgtcccttaagcatgtggtcatggt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985475 |
gaagataaatgtgtcccttaagcatgtggtcatggt |
54985440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 565 - 696
Target Start/End: Complemental strand, 54985444 - 54985313
Alignment:
| Q |
565 |
atggtagagcactttttaaaagaggtaagctcccgtagatctccgtatcttgaaggattagtctcttactttctacttgggatactttggccaaccnnnn |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985444 |
atggtagagcactttttaaaagaggtaagctcccgtagatctccgtatcttgaaggattagtctcttactttctacttgggatactttggccaaccaata |
54985345 |
T |
|
| Q |
665 |
nnnnttgattctagaattatatgattgatttt |
696 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
54985344 |
aaaattgattctagaattatatgattgatttt |
54985313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 113 - 343
Target Start/End: Complemental strand, 7883437 - 7883207
Alignment:
| Q |
113 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
212 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||||||||| | | |||||| ||||| || |
|
|
| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
213 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
312 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
|
| Q |
313 |
acatgcccaattgtatgtgccacagcaacct |
343 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |
|
|
| T |
7883237 |
acatgcccaattgtgtgtgccacagctacct |
7883207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 112 - 349
Target Start/End: Complemental strand, 18396224 - 18395987
Alignment:
| Q |
112 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
211 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
|
|
| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
212 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
311 |
Q |
| |
|
| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
|
|
| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
312 |
aacatgcccaattgtatgtgccacagcaacctgcagtt |
349 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
18396024 |
gacatgtccaattgtgtgtgcaacagcaacctgaagtt |
18395987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University