View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_40 (Length: 357)
Name: NF14177_low_40
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 27558776 - 27559106
Alignment:
| Q |
19 |
cctcctgaattgaagattttgattaaaccaataggagcacatttggcaccatttggtaattactatcgtaaaaagtaaaaacttcatattctccggattt |
118 |
Q |
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| T |
27558776 |
cctcctgaattgaacattttgattaaaccaataggagcacatttggcaccatttggtaattactatcgtaaaaagtaaaaacttcatattctccggattt |
27558875 |
T |
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| Q |
119 |
catggtaattggaatagaaacatcctttggaagatagactacttcacctgcaaataaacatcataaacaaagaaacaattatgcaaaagaaaaattgggg |
218 |
Q |
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| T |
27558876 |
catggtaattggaatagaaacatcctttggaagatagactacttcacctgcaaataaacatcataaataaagaaacaattatgcaaaagaaaaattgggg |
27558975 |
T |
|
| Q |
219 |
taacctttataggagtgtgatgtaaagccttaaaacataccacaaagatgggaaaatatgatggcgtctcctgtccatttatcatctgccactgtcgata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27558976 |
taacctttataggagtgtgatgtaaagccttaaaacataccacaaagatgggaaaatatgatggcgtctcctgtccatttatcatctgccactgtcgata |
27559075 |
T |
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| Q |
319 |
aatggtcgatatctttagccctgatgatgtc |
349 |
Q |
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| T |
27559076 |
aatggtcgatatctttagccctaatgatgtc |
27559106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 42352148 - 42351814
Alignment:
| Q |
19 |
cctcctgaattgaagattttgattaaaccaataggagcacatttggcaccatttggtaattact----atcgtaaaaagtaaaaacttcatattctccgg |
114 |
Q |
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| T |
42352148 |
cctcctgaattgaacatcttgattaaaccaataggcgcaaatttgactccatttggtaattccttcacagggactatcgtaaaaagttcatattctcggg |
42352049 |
T |
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| Q |
115 |
atttcatggtaattggaatagaaacatcctttggaagatagactacttcacctgcaaataaacatcataaacaaagaaacaattatgcaaaagaaaaatt |
214 |
Q |
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| T |
42352048 |
atttcatggtaattggaatagaaacatcctttggaagatagactacttcacctgcaaataaacatcataaacaaagaaacaattatacaaaagaaaaatt |
42351949 |
T |
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| Q |
215 |
ggggtaacctttataggagtgtgatgtaaagccttaaaacataccacaaagatgggaaaatatgatggcgtctcctgtccatttatcatctgccactgtc |
314 |
Q |
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| T |
42351948 |
ggtgtaatctttttagaagtgtaatgtgaagccttaaaacataccgcgaagatgggaaaatatgacggcgtctcctgtccatttatcatctgccactgtc |
42351849 |
T |
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| Q |
315 |
gataaatggtcgatatctttagccctgatgatgtc |
349 |
Q |
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| T |
42351848 |
gataaatggtcgatatctttagccctaatgatgtc |
42351814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 50917391 - 50917271
Alignment:
| Q |
94 |
taaaaacttcatattctccggatttcatggtaattggaatagaaaca-----tcctttggaagatagactacttcacctgcaaataaacatcataaacaa |
188 |
Q |
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|||||| ||| ||||||| |||||||||||||||| |||| |||||| || |||||||| |||||||||| |||||||||| | ||||||||||| |
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| T |
50917391 |
taaaaagttcgtattctcaggatttcatggtaattcgaatggaaacatcatttcatttggaaggtagactactttacctgcaaattagtatcataaacaa |
50917292 |
T |
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| Q |
189 |
agaaacaattatgcaaaagaa |
209 |
Q |
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|||||||||||| |||||||| |
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| T |
50917291 |
agaaacaattatacaaaagaa |
50917271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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