View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_low_45 (Length: 335)

Name: NF14177_low_45
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_low_45
NF14177_low_45
[»] chr6 (1 HSPs)
chr6 (1-217)||(13692576-13692794)
[»] chr1 (9 HSPs)
chr1 (154-236)||(42747731-42747813)
chr1 (197-239)||(5923888-5923930)
chr1 (163-237)||(21516465-21516539)
chr1 (164-237)||(31117556-31117629)
chr1 (200-233)||(15942340-15942373)
chr1 (163-236)||(20791772-20791845)
chr1 (197-238)||(28870462-28870503)
chr1 (164-237)||(32602976-32603049)
chr1 (198-238)||(3161024-3161064)
[»] chr7 (3 HSPs)
chr7 (182-237)||(31740618-31740673)
chr7 (172-230)||(42967964-42968022)
chr7 (184-238)||(44235292-44235346)
[»] chr4 (4 HSPs)
chr4 (182-237)||(30802463-30802518)
chr4 (155-237)||(47789319-47789401)
chr4 (195-239)||(2103186-2103230)
chr4 (197-237)||(30070330-30070370)
[»] chr3 (3 HSPs)
chr3 (155-234)||(43822713-43822792)
chr3 (198-235)||(20873056-20873093)
chr3 (182-237)||(18084855-18084910)
[»] chr5 (2 HSPs)
chr5 (165-237)||(34640215-34640287)
chr5 (198-238)||(31812165-31812205)
[»] chr8 (1 HSPs)
chr8 (195-237)||(12524593-12524635)
[»] chr2 (1 HSPs)
chr2 (156-238)||(21938074-21938156)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13692794 - 13692576
Alignment:
Q  1 tcctctccttttccatctctcttcttttcttcttgttcctaacaaaatacatctatgcactttagttacatatacatatacctacggaaaccaaacaatt 100  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | |  ||| |||||||||    
T  13692794 tcctctccttttccatctctcttattttcttcttattcctaataaaatacatctatgtactttagttacatatacatatacatccacaaaacaaacaatt 13692695  T
Q  101 gtgcttggacatagtg--ccttgtttgtaaaaaatagcagataattgataaatagacttataacggatgacttataagttaggttataggtgatatcaga 198  Q
    | ||||||||| ||||   || ||| |||||||||||| |||||||||||| |    ||||| ||||||||||||||||||  |||||| |||||  |||    
T  13692694 gcgcttggacacagtggctctggttagtaaaaaatagcggataattgataagttagtttatagcggatgacttataagttaatttatagttgatagtaga 13692595  T
Q  199 taagttagctaattgaatt 217  Q
    |||||||||| || |||||    
T  13692594 taagttagctgatagaatt 13692576  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 42747813 - 42747731
Alignment:
Q  154 acttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatt 236  Q
    ||||||| | ||||||||||||| ||| |||||| |||||   |||||| ||| ||||||||||| |||||||||||||||||    
T  42747813 acttatagctgatgacttataagctagtttatagctgatagaggataagctagttaattgaatttgtagtgtttggtaaaatt 42747731  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 5923930 - 5923888
Alignment:
Q  197 gataagttagctaattgaatttttagtgtttggtaaaattaat 239  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  5923930 gataagctagctgattgaatttttagtgtttggtaaaattaat 5923888  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 21516465 - 21516539
Alignment:
Q  163 ggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    |||||||||||||| ||| |||||| |||||   |||||| ||||| ||||||||| | ||||||||||||||||    
T  21516465 ggatgacttataagctagcttatagatgatagtggataagctagctgattgaatttgttgtgtttggtaaaatta 21516539  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 31117556 - 31117629
Alignment:
Q  164 gatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    ||||||||||||| ||| |||||| ||| | || ||||| ||||| ||||||||| ||||||||| ||||||||    
T  31117556 gatgacttataagctagcttatagttgagagcaaataagctagctgattgaatttgtagtgtttgataaaatta 31117629  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 15942340 - 15942373
Alignment:
Q  200 aagttagctaattgaatttttagtgtttggtaaa 233  Q
    ||||||||||||||||||| ||||||||||||||    
T  15942340 aagttagctaattgaatttgtagtgtttggtaaa 15942373  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 20791772 - 20791845
Alignment:
Q  163 ggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatt 236  Q
    |||||||||||||| ||| |||||| | |||   | |||| ||||||| ||||||| |||||||||||||||||    
T  20791772 ggatgacttataagctagattatagctcatagtgggtaagctagctaactgaatttgtagtgtttggtaaaatt 20791845  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 28870462 - 28870503
Alignment:
Q  197 gataagttagctaattgaatttttagtgtttggtaaaattaa 238  Q
    |||||| ||| | |||||||||||||||||||||||||||||    
T  28870462 gataagctagtttattgaatttttagtgtttggtaaaattaa 28870503  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 32603049 - 32602976
Alignment:
Q  164 gatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    ||||||||||||||||  ||||||  |||| |  |||| |||||| ||||||||| |||||||| |||||||||    
T  32603049 gatgacttataagttaacttatagccgatagcgaataaattagctgattgaatttgtagtgtttagtaaaatta 32602976  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 3161064 - 3161024
Alignment:
Q  198 ataagttagctaattgaatttttagtgtttggtaaaattaa 238  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  3161064 ataagctagctgattgaatttgtagtgtttggtaaaattaa 3161024  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 31740673 - 31740618
Alignment:
Q  182 ttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    |||||| ||||| |||||||||||||| |||||||||  |||||||||||||||||    
T  31740673 ttatagatgatagcagataagttagcttattgaatttgcagtgtttggtaaaatta 31740618  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 42968022 - 42967964
Alignment:
Q  172 ataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggt 230  Q
    ||||||||| |||||||||||| |||||||| ||||  ||||||||| || ||||||||    
T  42968022 ataagttagcttataggtgatagcagataagctagccgattgaatttgtaatgtttggt 42967964  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 44235292 - 44235346
Alignment:
Q  184 ataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaattaa 238  Q
    |||| ||||| |||||||||||||| ||| ||||| |||||||||||||| ||||    
T  44235292 atagttgatagcagataagttagctgatttaatttgtagtgtttggtaaagttaa 44235346  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 30802518 - 30802463
Alignment:
Q  182 ttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    |||||| ||||| | |||||||||||| ||||||||| ||||||||||||||||||    
T  30802518 ttatagatgatagcggataagttagcttattgaatttgtagtgtttggtaaaatta 30802463  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 47789319 - 47789401
Alignment:
Q  155 cttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    |||||||| |||||||||||||  ||||| ||| ||||| | |||||| || || ||||| ||| ||||||||||||||||||    
T  47789319 cttataacagatgacttataagccaggttgtagctgatagcggataagctaactgattgattttgtagtgtttggtaaaatta 47789401  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 2103186 - 2103230
Alignment:
Q  195 cagataagttagctaattgaatttttagtgtttggtaaaattaat 239  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  2103186 cagataagctagcttattgaatttgtagtgtttggtaaaattaat 2103230  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 30070370 - 30070330
Alignment:
Q  197 gataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  30070370 gataagctagctaattgaatttgtagtgtttggtaaaatta 30070330  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 43822792 - 43822713
Alignment:
Q  155 cttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaa 234  Q
    |||||| ||||||||| ||||| ||| |||||| ||||| | |||||  |||||||||||||||  ||||||||||||||    
T  43822792 cttatagcggatgactgataagctagcttatagctgatagcggataaactagctaattgaatttgaagtgtttggtaaaa 43822713  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 20873056 - 20873093
Alignment:
Q  198 ataagttagctaattgaatttttagtgtttggtaaaat 235  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  20873056 ataagttagcttattgaatttttagtgtttggtaaaat 20873093  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 18084855 - 18084910
Alignment:
Q  182 ttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    |||||| ||||| | |||||||||||| |||||||||  |||||||||||||||||    
T  18084855 ttatagatgatagcggataagttagctgattgaatttgcagtgtttggtaaaatta 18084910  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 34640287 - 34640215
Alignment:
Q  165 atgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    ||||| |||||| ||| |||||| ||||| | |||||| ||||| ||||||||| || |||||||||||||||    
T  34640287 atgacctataagctagcttatagctgatagcggataagctagcttattgaatttgtaatgtttggtaaaatta 34640215  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 31812205 - 31812165
Alignment:
Q  198 ataagttagctaattgaatttttagtgtttggtaaaattaa 238  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  31812205 ataagctagctgattgaatttgtagtgtttggtaaaattaa 31812165  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 12524593 - 12524635
Alignment:
Q  195 cagataagttagctaattgaatttttagtgtttggtaaaatta 237  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||    
T  12524593 cagataatttagctgattgaatttgtagtgtttggtaaaatta 12524635  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 21938156 - 21938074
Alignment:
Q  156 ttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaattaa 238  Q
    ||||||| ||||||||||||||||| |||||| ||||   | |||| |||| | |||||||||  ||||||| ||||||||||    
T  21938156 ttataacagatgacttataagttagtttatagttgatgataaataaattagttgattgaatttgcagtgtttagtaaaattaa 21938074  T

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