View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_low_5 (Length: 705)

Name: NF14177_low_5
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_low_5
NF14177_low_5
[»] chr1 (5 HSPs)
chr1 (403-689)||(1311487-1311773)
chr1 (14-220)||(1311284-1311489)
chr1 (576-665)||(1292648-1292737)
chr1 (172-320)||(1291885-1292032)
chr1 (14-90)||(1291708-1291785)
[»] scaffold0245 (3 HSPs)
scaffold0245 (576-665)||(19055-19144)
scaffold0245 (172-320)||(18290-18437)
scaffold0245 (14-90)||(18113-18190)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 403 - 689
Target Start/End: Original strand, 1311487 - 1311773
Alignment:
Q  403 aaatccatagttgcacgcaatagtttgacaaaacacggaccacatgtctgtccgcgaaatgtaattcttacacacacaaaatgtgtaaaaaccgtataag 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1311487 aaatccatagttgcacgcaatagtttgacaaaacacggaccacatgtctgtcggcgaaatgtaattcttacacacacaaaatgtgtaaaaaccgtataag 1311586  T
Q  503 caaaatagcttctagtacggagtatattaataaactacttttatattcagtagtgttgtagctctggtcgcaggcataaacagaaataagtatggagatg 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1311587 caaaatagcttctagtacggagtatattaataaactacttttatattcagtagtgttgtagctctggtcgcaggcataaacagaaataagtatggagatg 1311686  T
Q  603 cacacatcacctttcaatgatcagggagcgaatattggcaacagcttcatcagaaatctaagacataaaactgagtgttaaaaatag 689  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1311687 cacacatcacctttcaatgatcagggagcgaatattggcaacagcttcatcagaaatctaagacataaaactgagtgttaaaaatag 1311773  T

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Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 1311284 - 1311489
Alignment:
Q  14 ataatacttcgcaaatagttggcatattaaaagcccgttacgtgaaacataaatcctacaactgaaatgccctcttctctcatttctaaaatccacctcc 113  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1311284 ataatacttcgcaaatagttggcatat-aaaatcccgttacgtgaaacataaatcctacaactgaaatgccctcttctctcatttctaaaatccacctcc 1311382  T
Q  114 acactgcttcaccccttcacatttctccaacttgttttttgattcttgtattttattccttacttcttcgagattccgtctcggcattcaattgtgcggt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1311383 acactgcttcaccccttcacatttctccaacttgttttttgattcttgtattttcttccttacttcttcgagattccgtctcggcattcaattgtgcggt 1311482  T
Q  214 ccggaaa 220  Q
    |||||||    
T  1311483 ccggaaa 1311489  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 576 - 665
Target Start/End: Original strand, 1292648 - 1292737
Alignment:
Q  576 gcataaacagaaataagtatggagatgcacacatcacctttcaatgatcagggagcgaatattggcaacagcttcatcagaaatctaaga 665  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1292648 gcataagcagaaataggtatggagatgcacacattacctttcaatgatcagggagcgaatattggcaacagcgtcatcagaaatctaaga 1292737  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 1291885 - 1292032
Alignment:
Q  172 cttacttcttcgagattccgtctcggcattcaattgtgcggtccggaaaacagcaaattgtggccggaaagttgccgaagatcactaaggtcaaagaggg 271  Q
    ||||||||||| | |||||||||| |||||  |  |||| |||| ||| ||| |||| ||| || ||||||||||||||||| ||  |||| |||| |||    
T  1291885 cttacttcttctacattccgtctcagcatttgaaggtgctgtccagaatacaccaaaatgtagcaggaaagttgccgaagattaccgaggtaaaag-ggg 1291983  T
Q  272 tttgtcgcattgaagcctatgtaacagttgcgatgggcagattccggtg 320  Q
    |||||  |||||||||| ||||| |||||||||  |||| |||||||||    
T  1291984 tttgttacattgaagcccatgtagcagttgcgacaggcaaattccggtg 1292032  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 1291708 - 1291785
Alignment:
Q  14 ataatacttcgcaaatagttggc-atattaaaagcccgttacgtgaaacataaatcctacaactgaaatgccctcttc 90  Q
    ||||||||||||||| ||||||| ||||||||||||| |||  |||||  |||| |||| |||||||| | |||||||    
T  1291708 ataatacttcgcaaagagttggcaatattaaaagcccattatttgaaatgtaaaccctaaaactgaaacgtcctcttc 1291785  T

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Target: scaffold0245 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 576 - 665
Target Start/End: Original strand, 19055 - 19144
Alignment:
Q  576 gcataaacagaaataagtatggagatgcacacatcacctttcaatgatcagggagcgaatattggcaacagcttcatcagaaatctaaga 665  Q
    |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19055 gcataagcagaaataggtatggagatgcacacattacctttcaatgatcagggagcgaatattggcaacagcgtcatcagaaatctaaga 19144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 172 - 320
Target Start/End: Original strand, 18290 - 18437
Alignment:
Q  172 cttacttcttcgagattccgtctcggcattcaattgtgcggtccggaaaacagcaaattgtggccggaaagttgccgaagatcactaaggtcaaagaggg 271  Q
    ||||||||||| | |||||||||| |||||  |  |||| |||| ||| ||| |||| ||| || ||||||||||||||||| ||  |||| |||| |||    
T  18290 cttacttcttctacattccgtctcagcatttgaaggtgctgtccagaatacaccaaaatgtagcaggaaagttgccgaagattaccgaggtaaaag-ggg 18388  T
Q  272 tttgtcgcattgaagcctatgtaacagttgcgatgggcagattccggtg 320  Q
    |||||  |||||||||| ||||| |||||||||  |||| |||||||||    
T  18389 tttgttacattgaagcccatgtagcagttgcgacaggcaaattccggtg 18437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 18113 - 18190
Alignment:
Q  14 ataatacttcgcaaatagttggc-atattaaaagcccgttacgtgaaacataaatcctacaactgaaatgccctcttc 90  Q
    ||||||||||||||| ||||||| ||||||||||||| |||  |||||  |||| |||| |||||||| | |||||||    
T  18113 ataatacttcgcaaagagttggcaatattaaaagcccattatttgaaatgtaaaccctaaaactgaaacgtcctcttc 18190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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