View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_52 (Length: 316)
Name: NF14177_low_52
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 21018991 - 21018702
Alignment:
| Q |
14 |
cacagaaaatgagcccaaagattatgcggtgttataaagttaaattgaagccactgcataaccttttgccacaacctcgtaaccacctcgcaacttaaga |
113 |
Q |
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| T |
21018991 |
cacagaaaatgagcccaaagattatgcggtgttataaaattaaattgaagccactgcataaccttttgccacaacctcgtaaccaccttgcaatgtaaga |
21018892 |
T |
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| Q |
114 |
agaggtgcaa------cgccgtttcctccaaccttccacaaaaaacacaagtctttgatgcatccgcatttaaaacacccctaatccctaatttcaccgt |
207 |
Q |
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| T |
21018891 |
agaggtgcaagtgcaacgccgtttcctccaaccttccaaaaaaaacacaagtctttgatgcatccgcattcaaaacacccctaatcgctagattcaccct |
21018792 |
T |
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| Q |
208 |
tgttggtatacagtcaagtaacaaagtccacgcaaaagctaacactttagacggcacccgacatctccaaagataaccaaacacatgctc |
297 |
Q |
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| T |
21018791 |
tatcggtatacggtcaagtaacaaagtccaagcaaaagctaacactttagacggcacccgacacctccaaagatcaccaaacacacgctc |
21018702 |
T |
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Back To:
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 16744201 - 16744129
Alignment:
| Q |
220 |
gtcaagtaacaaagtccacgcaaaagctaacactttagacggcacccgacatctccaaagataaccaaacaca |
292 |
Q |
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| T |
16744201 |
gtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccaccaaacaca |
16744129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 23293457 - 23293509
Alignment:
| Q |
130 |
ttcctccaaccttccacaaaaaacacaagtctttgatgcatccgcatttaaaa |
182 |
Q |
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| T |
23293457 |
ttcctccctccttccacacaacacacaattcttcgatgcatccgcatttaaaa |
23293509 |
T |
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