View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_53 (Length: 310)
Name: NF14177_low_53
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 54 - 295
Target Start/End: Original strand, 30695564 - 30695804
Alignment:
| Q |
54 |
atttggtcaactagttaacactctaattaaaacacgaccttgatcatttcattccacggcttcatacacattaaataatggcaagattcgtgcaaaatca |
153 |
Q |
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| T |
30695564 |
atttggccaaatagttaacactctaattaaaacacgaccttgatcatttcattccacggcttcatacacattaaataatggcaagattcctgcaaaatca |
30695663 |
T |
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| Q |
154 |
attgaataatatgcaattgcagtgagttcannnnnnnnnattccgattaagatcgaacacttcatatttaaaactctatttttagactataaaaagaaga |
253 |
Q |
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| T |
30695664 |
actgaataatatgcaattgtagtgcgttca-ttttttgtattccgattaagatcgaacttttcatatttaaaactctatttttagactataaaaagaaga |
30695762 |
T |
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| Q |
254 |
aattttctttaaatatggattgttcgattttaatgagataac |
295 |
Q |
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| T |
30695763 |
aattttctttaaatatggattgttcgattttaataagataac |
30695804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 30695490 - 30695545
Alignment:
| Q |
14 |
agggggtagcaatggatcactatctcacaaggtaggttttatttggtcaactagtt |
69 |
Q |
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| T |
30695490 |
agggggtagcaatggatcactatctcacaaggtaggttttatttggtcaaatagtt |
30695545 |
T |
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