View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_56 (Length: 299)
Name: NF14177_low_56
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_56 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 28063007 - 28062871
Alignment:
| Q |
165 |
tcttaaagttaaacttgctctaattttagtaaccaaacaaaa--ctttgtctaatttttccgtgaagagcaagaaatcacttctacgaagcaaaacgagc |
262 |
Q |
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| T |
28063007 |
tcttaaagttaaacttactctaattttagtaaccaaacaaaaaacttagtctaatttttccgtgaagagcaagaaatcacttctactaagcaaaacgagc |
28062908 |
T |
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| Q |
263 |
acgtaatcaaacttcaccacataattttcttggacat |
299 |
Q |
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| T |
28062907 |
acgtaatcaaacttcaccacatattttttttggacat |
28062871 |
T |
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Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 28063168 - 28063072
Alignment:
| Q |
4 |
tcagaggttgaaatgcagttctttgttaatggacacagtgccagtgatggtggattattctgtactccaagatatgctggctttttaccactgcacc |
100 |
Q |
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| T |
28063168 |
tcagaggttgaaatgcagttctttgttaatggacacagtgccagtgatggtggattattctgtactccaagatatgctggctttttaccactgcacc |
28063072 |
T |
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