View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_57 (Length: 294)
Name: NF14177_low_57
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 279
Target Start/End: Complemental strand, 32887627 - 32887372
Alignment:
| Q |
24 |
acctgatgagacaaaattgtaatatgtaaaagcaaggaaataaattaacacattcctgaacgatgccattcaaataagagtgattttgttgttgatccac |
123 |
Q |
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| T |
32887627 |
acctgttgagacaaaattgtaatatgtaaaagcaaggaaataaattaacacattcatgaacgatgccattcaaataagagtgattttgttgttgatccac |
32887528 |
T |
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| Q |
124 |
tatggctgtaattacgtatatcgaatgtgactccacgaataagtttagaaaaagcatatcccatgcaaactccaaaccaactggtaggtctgaattgtgt |
223 |
Q |
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| T |
32887527 |
tatggctgcaattacgtatatcgaatgtgactctacgaataagtttagaaaaagcatatcccatgcaaactccaaaccaactggtaggtctgaattgtgt |
32887428 |
T |
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| Q |
224 |
cttggctcagtttttgaaaggttttagctgctaaaacagaaccattttcatctctg |
279 |
Q |
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| T |
32887427 |
cttggctcagtttttgaaaggttctagctgctaaaacagaaccattttcatctctg |
32887372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 12147335 - 12147413
Alignment:
| Q |
33 |
gacaaaattgtaatatgtaaaagcaaggaaataaattaacacattcctgaacgatgccattcaaataagagtgattttg |
111 |
Q |
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| T |
12147335 |
gacaaaattgtagtctatgaaagtaaggaaaggaactaacacattcttgaacaaggacattcaaataagagtgattttg |
12147413 |
T |
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