View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_60 (Length: 290)
Name: NF14177_low_60
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 5988524 - 5988250
Alignment:
| Q |
1 |
tgtatcccacacatcatccagtactagcagaaaatttgcaatgcttaaaatttgttgcagtttcactaatagaagattgcggtgcatgtcactggtggca |
100 |
Q |
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| T |
5988524 |
tgtatcccacacatcatccagtagtagcaaaaaatttgtagtgcttaaaatttgttgcagtttcactaatagaagattgcggtgcatgtcactggtgtca |
5988425 |
T |
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| Q |
101 |
tttatttttgtattggaaaattcaagaggttgagaattcagattaccactactgattccctgtgaagtaatagattcaagaatggtttccaaaaccctga |
200 |
Q |
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| T |
5988424 |
ttaatttttgtattggaaaattcaagaggttgagaattcagattaccactactgattccctgtgaagtaatagattcaagaatagtttccaaaaccctga |
5988325 |
T |
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| Q |
201 |
aaatatcaaaatcttttgagacaactacccaccctctaagcccaaatctttccttaacttctggattgttgtaaa |
275 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| |
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| T |
5988324 |
aaatatcaaaatcttttgagacaactacccaccctctcaccccaaatctttccttaacttctagattgttgtaaa |
5988250 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 11491352 - 11491410
Alignment:
| Q |
161 |
tgtgaagtaatagattcaagaatggtttccaaaaccctgaaaatatcaaaatcttttga |
219 |
Q |
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| T |
11491352 |
tgtgaagtaatagattctagaatggtttcataaaccctgaaaatatcaaaatcatttga |
11491410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 7492509 - 7492569
Alignment:
| Q |
161 |
tgtgaagtaatagattcaagaatggtttccaaaaccctgaaaatatcaaaatcttttgaga |
221 |
Q |
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| T |
7492509 |
tgtgaagtaatagattcaagaatggtttcaaaaacattcaaattatcaaaatcttttgaga |
7492569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 18387862 - 18387823
Alignment:
| Q |
161 |
tgtgaagtaatagattcaagaatggtttccaaaaccctga |
200 |
Q |
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| T |
18387862 |
tgtgaagtgatagattcaagaatggtttccaaaaccctga |
18387823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 17311673 - 17311635
Alignment:
| Q |
164 |
gaagtaatagattcaagaatggtttccaaaaccctgaaa |
202 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
17311673 |
gaagtaacagattcaagaatggtttccaaaaccctgaaa |
17311635 |
T |
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