View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_63 (Length: 270)
Name: NF14177_low_63
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_63 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 40526520 - 40526271
Alignment:
| Q |
16 |
atcaactcattttaatcaatttgtggcattaannnnnnncttcatcaaaccaacaatttatttcaatcaattaaatctttttaccaaactatagttttct |
115 |
Q |
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| T |
40526520 |
atcaactcatcttaatcaatttgtggcattaatttttttcttcatcaaaccaacaatttatttcaatcaattaaatctttttaccaaactatagttttct |
40526421 |
T |
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| Q |
116 |
acaacaaaaattatttatttaaaagtaaccaatatacacacnnnnnnnnnatcaaatcaaaaaccacccatctttaaattttcatcgcatcagaaggtaa |
215 |
Q |
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| T |
40526420 |
acaacaaaaattatttatttaaaagtaaccaatatacacacatttttt---tc--atcaaaaaccacccttctttaaattttcatcgcatcagaaggtaa |
40526326 |
T |
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| Q |
216 |
ctaagcgaaggtttttgtgtgctaatgtttttatttctttttagaaaaaactctt |
270 |
Q |
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| T |
40526325 |
ctaagcgaaggtttttgtgtgctaatgtttttatttctttttagaaaaaactctt |
40526271 |
T |
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