View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_66 (Length: 250)
Name: NF14177_low_66
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 43555561 - 43555344
Alignment:
| Q |
19 |
tatgcttctagaggaaatgggccatggtcatgagaatgtaaaacaatgtctaagtcacattatataactgcaagaatgatgaatttgatgcgagaatacc |
118 |
Q |
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| T |
43555561 |
tatgcttctagaggaaatgggccatggtcatgagaatgtaaaacaatgtctaagtcacataatataactgcaagaatgatgaatttgatgcgagaatacc |
43555462 |
T |
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| Q |
119 |
ttatccttaagaatataattacagtcactataagtaatcaaaatcgatgaataataattgtagtaatgttatgataaagtaagcatgattaattaattgc |
218 |
Q |
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| T |
43555461 |
ttatccttaagaatataattacagtcgctat-agtaatcaaaatcgatgaataataattgtagtaatgttatgataaagtaagcatgattaattaattgc |
43555363 |
T |
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| Q |
219 |
aaaaatatctaagagtgat |
237 |
Q |
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| T |
43555362 |
aaaaatatctaagagtgat |
43555344 |
T |
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