View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_67 (Length: 250)
Name: NF14177_low_67
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6817660 - 6817895
Alignment:
| Q |
1 |
tttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctgtatagctctttattttacccatgtt |
100 |
Q |
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| T |
6817660 |
tttcagtcactcccatctttgctgcgattaaaattggtgacactgttctccttttcgcaatagcctcattttctgtattgctctttattttatccatgtt |
6817759 |
T |
|
| Q |
101 |
atcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcagttcattcattacttgcttagcccga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6817760 |
atcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcactgaatcagttcattcattacttgcttagcccga |
6817859 |
T |
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| Q |
201 |
ataagttttttcttcctcctttggattttctctacc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6817860 |
ataagttttttcttcctcctttggattttctctacc |
6817895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6809531 - 6809766
Alignment:
| Q |
1 |
tttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctgtatagctctttattttacccatgtt |
100 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
6809531 |
tttcagtcactcccatctttgctgcgattaaaattggtgacattgttctccttttcgcaatagcctcattttctgtattgctctttattttacctatgtc |
6809630 |
T |
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| Q |
101 |
atcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcagttcattcattacttgcttagcccga |
200 |
Q |
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| T |
6809631 |
atcaccaccattctcttcaacattagaacttggtcctgtgaaatcatacttgaataaagaagcatgctgaatcagttcattcattacttgcttagcccga |
6809730 |
T |
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| Q |
201 |
ataagttttttcttcctcctttggattttctctacc |
236 |
Q |
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||| |||||| ||||||||||||||||||||||||| |
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| T |
6809731 |
atatgtttttccttcctcctttggattttctctacc |
6809766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6832174 - 6832409
Alignment:
| Q |
1 |
tttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctgtatagctctttattttacccatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| | |||| |
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| T |
6832174 |
tttcagtcactcccatctttgctgcaattaaaattggtgacaccattctccttttctcaataacttcattttctgtattgctctttattttatctatgtc |
6832273 |
T |
|
| Q |
101 |
atcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcagttcattcattacttgcttagcccga |
200 |
Q |
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| T |
6832274 |
accaccaccaagttcttcaacacgaggacttggtcctgtaaaatcatacttgtataaagaagcgtgctgaatcagttcattcatcacttgcttagcccga |
6832373 |
T |
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| Q |
201 |
ataagttttttcttcctcctttggattttctctacc |
236 |
Q |
| |
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|| |||||| |||| |||||||||||||||||||| |
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| T |
6832374 |
atgtgtttttccttcttcctttggattttctctacc |
6832409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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