View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_68 (Length: 247)
Name: NF14177_low_68
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 43984517 - 43984318
Alignment:
| Q |
32 |
gtgtgattaatttggtttgtactttaagttattatcaaagtgatagagacatcagagctctgtctttaaaaattgcaattttgttcagtcttttctgttt |
131 |
Q |
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| T |
43984517 |
gtgtgattaatttcgtttgtactttaagttattatcaaagtgatagagacatcagagctctgtctttaaaaattgcaattttgttcagtcttttctgttt |
43984418 |
T |
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| Q |
132 |
tgataattttctcaagttgaatcgattgcccaaacctatctgtaattatcgggtttgtcgttatgtgtatgaattccatggtatatacatgtggactatg |
231 |
Q |
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| T |
43984417 |
tgataattttctcaagttgaatcgatcgcccaaacctatctgtaattatcgggtttgtcgttatgtgtatgaattccatggtatatacatgtggactatg |
43984318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 43993087 - 43993031
Alignment:
| Q |
32 |
gtgtgattaatttggtttgtactttaagttattatcaaagtgatagagacatcagag |
88 |
Q |
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| T |
43993087 |
gtgtgattaatttggtttgtactttaagtgattatcaaagtaatagaggcagcagag |
43993031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 43919179 - 43919265
Alignment:
| Q |
32 |
gtgtgattaatttggtttgtac-tttaagttattatcaaagtgatagagacatcagagctctgtctttaaaaattgcaattttgttc |
117 |
Q |
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| T |
43919179 |
gtgtgattaatttggtttgtacttttaagtgatttttaaaatgatataggcagcagagagctgtgtttaaaaaatgcaatttagttc |
43919265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 8830322 - 8830275
Alignment:
| Q |
32 |
gtgtgattaatttggtttgtactttaagttattatcaaagtgatagag |
79 |
Q |
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| T |
8830322 |
gtgtgattagtttggtttgtactttaagtcattatcaaagtgatagag |
8830275 |
T |
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