View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_7 (Length: 636)
Name: NF14177_low_7
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 97 - 575
Target Start/End: Complemental strand, 14459679 - 14459209
Alignment:
| Q |
97 |
ttgtaacaacacaacagttgtaacaaagtgggtgcaaaagccgcatcacatcacatcgcggccttggtttaagaccatggtgggtacgtactatcgttat |
196 |
Q |
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| T |
14459679 |
ttgtaacaacacaacagttgtaacaaagtgggtgcaaaagccgcatcacattacatcgcggccttggtttaagaccatggtgggtgctttctatcgttat |
14459580 |
T |
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| Q |
197 |
aggtaataaaatattgtaatattgcatcgtagattaaaaataactgtcctttcaaaggtgagagaaacacgcatagagaggatcacatttttcttatacc |
296 |
Q |
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| T |
14459579 |
aggtaataaaatattgtaatattgcatcgtagattaaaaataactgtcctttgaaaggtgagagaaacacacatagagaggatcacatttttcttatacc |
14459480 |
T |
|
| Q |
297 |
gtattgatttgtggtaagaaatgcgatcattggttgctctttcacttagcttatcaactaagcaactcagaacagaacaaaataaaagactaactgtaca |
396 |
Q |
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| T |
14459479 |
gtatagatttgtggtaagaaatgcgatccttggttgctctttcacttagcttatcaactaagcaactcagaacagaacaaaataaaagactaactgtaca |
14459380 |
T |
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| Q |
397 |
aattatcatcttttaagaaaactggaaaggtattaatttggtccctatcaagtgttagaaaagattataacagtaggttataagctccatt-tccggaaa |
495 |
Q |
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| T |
14459379 |
gattatcatcttttaagaaaactggaaaggtattaatttggtccctatcaagtgttcgaaaaga---------taggttataagctccattgtccggaaa |
14459289 |
T |
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| Q |
496 |
cagctagggtacctccagtgtttcattgttatttacttaagaaagctgtaaagtaaagagttgaagtcactaacggagga |
575 |
Q |
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| T |
14459288 |
cagttagggtaccttcagtgtttcattgttatttacttaagaaagctgtaaagtaaagagttgaagtcactaacggagga |
14459209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 579 - 623
Target Start/End: Complemental strand, 14459155 - 14459111
Alignment:
| Q |
579 |
acttttcattctcaataatacaccgacatttatattcatctgtgc |
623 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14459155 |
acttttcattctcaataatacaccgacatttatattcatttgtgc |
14459111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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