View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14177_low_71 (Length: 240)

Name: NF14177_low_71
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14177_low_71
NF14177_low_71
[»] chr6 (2 HSPs)
chr6 (14-144)||(14087691-14087821)
chr6 (14-144)||(14092223-14092353)
[»] chr1 (2 HSPs)
chr1 (14-144)||(46454133-46454263)
chr1 (14-144)||(46461534-46461663)
[»] chr8 (3 HSPs)
chr8 (14-144)||(24876452-24876581)
chr8 (14-144)||(24880954-24881083)
chr8 (41-144)||(24886289-24886392)
[»] chr2 (4 HSPs)
chr2 (14-144)||(33681818-33681945)
chr2 (14-144)||(33698875-33699002)
chr2 (145-221)||(32181013-32181089)
chr2 (152-209)||(32161691-32161748)
[»] chr7 (4 HSPs)
chr7 (14-144)||(9955334-9955463)
chr7 (14-85)||(9950346-9950416)
chr7 (14-120)||(32213508-32213617)
chr7 (14-107)||(32213289-32213385)
[»] chr5 (1 HSPs)
chr5 (14-112)||(9360905-9361002)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 14087821 - 14087691
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14087821 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctaactacattcgtgttcaactttagtgagtgcatagttcatattattatt 14087722  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||||||||||||||||||||||||||    
T  14087721 agaagtctatattttccgctgctactcaaca 14087691  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 14092353 - 14092223
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14092353 tagaagttcatctttctttttagacattttttcatacaaatttattgttctaactacattcgtgttcaactttagtgagtgcatagttcatattattatt 14092254  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||||||||||||||||||||||||||    
T  14092253 agaagtctatattttccgctgctactcaaca 14092223  T

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Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 46454133 - 46454263
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46454133 tagaagttcatctttctttttagacattttttcatacaaatttattgttctaactacattcgtgttcaactttagtgagtgcatagttcatattattatt 46454232  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||||||||||||||||||||||||||    
T  46454233 agaagtctatattttccgctgctactcaaca 46454263  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 46461534 - 46461663
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46461534 tagaagttcatctttcttcttacacatttt-tcatacaaatttattgttctagctacattcatgttcaactttagtgagtgcatagttcatattattatt 46461632  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    ||||||||||||||||||||||| |||||||    
T  46461633 agaagtctatattttccgctgctgctcaaca 46461663  T

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Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 24876581 - 24876452
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24876581 tagaagttcatctttcttcttagacattttt-catacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 24876483  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||| ||||||||||||||||||||||    
T  24876482 agaagtctgtattttccgctgctactcaaca 24876452  T

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Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 24881083 - 24880954
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24881083 tagaagttcatctttcttcttagacattttt-catacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 24880985  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    ||||||||||||||| |||||||||||||||    
T  24880984 agaagtctatattttacgctgctactcaaca 24880954  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 24886392 - 24886289
Alignment:
Q  41 tttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctatattttccgctgctactc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24886392 tttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattattagaagtctgtattttccgctgctactc 24886293  T
Q  141 aaca 144  Q
    ||||    
T  24886292 aaca 24886289  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 33681818 - 33681945
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  33681818 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttca---tattatt 33681914  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||||||||||||||||||||||||||    
T  33681915 agaagtctatattttccgctgctactcaaca 33681945  T

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Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 33698875 - 33699002
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  33698875 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttca---tattatt 33698971  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||||||||||||||||||||||||||    
T  33698972 agaagtctatattttccgctgctactcaaca 33699002  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 32181013 - 32181089
Alignment:
Q  145 ccatatatctagataaaagttatagcatatctacaatgacaacaagaaagatataattgtatcattgttaagggaga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32181013 ccatatatctagataaaagttatagcatatctacaatgacaacaagaaagatataattgtatcattgttaagggaga 32181089  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 32161691 - 32161748
Alignment:
Q  152 tctagataaaagttatagcatatctacaatgacaacaagaaagatataattgtatcat 209  Q
    |||||||| ||| |||| |||||||||||||||||||| |||| |||||||| |||||    
T  32161691 tctagatacaagatatatcatatctacaatgacaacaacaaaggtataattgaatcat 32161748  T

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Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 9955334 - 9955463
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattatt 113  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  9955334 tagaagttcacctttcttcttagacatttt-tcatacaaatttattgttctagctacattcgtgttcaactttaatgagtacatagttcatattattatt 9955432  T
Q  114 agaagtctatattttccgctgctactcaaca 144  Q
    |||||||||||||||||||||||||||||||    
T  9955433 agaagtctatattttccgctgctactcaaca 9955463  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 9950346 - 9950416
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactt 85  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  9950346 tagaagttcatctttcttcttagacatttt-tcatacaaatttattgttctaactacattcgtgttcaactt 9950416  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 32213617 - 32213508
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagcta----cattcgtgttcaactttagtgagtgcatagttcatattat 109  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||      |||||||||| ||||||| |||||||| ||||||| ||    
T  32213617 tagaagtttatctttcttcttagacat-ttttcatacaagtttattgttctagctaagttatttcgtgttcagctttagtaagtgcatatttcatatcat 32213519  T
Q  110 tattagaagtc 120  Q
    |||||||||||    
T  32213518 tattagaagtc 32213508  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 32213289 - 32213385
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagcta----cattcgtgttcaactttagtgagtgcatagttcatatt 107  Q
    ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||      ||||||||||||||||||||||||||| ||||||||    
T  32213289 tagaagttcatttttcttcttagaca-tttttcatacaagtttattgttctagctatgttatttcgtgttcaactttagtgagtgcatatttcatatt 32213385  T

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Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 9361002 - 9360905
Alignment:
Q  14 tagaagttcatctttcttcttagacattttttcatacaaatttattgttctagctacattcgtgttcaactttagtgagtgcatagttcatattattat 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9361002 tagaagttcatctttcttcttagacattttt-catacaaatttattgttctagctacattcatgttcaactttagtgagtgcatagttcatattattat 9360905  T

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