View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_76 (Length: 223)
Name: NF14177_low_76
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_76 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 43555275 - 43555347
Alignment:
| Q |
151 |
cttcttctcaagtttccactatttttcaattttaccaagttaaaaaagagttgcaaaatgtcaaacataatca |
223 |
Q |
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| T |
43555275 |
cttcttctcaagtttccactatttttcaattttaccaagttaaaaaagagttgcaaaatgtcaaacataatca |
43555347 |
T |
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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 43554978 - 43555078
Alignment:
| Q |
1 |
catcaaaagttaaatctattcaattcatctaacaataaaaatttaaaaattagttccaattcatctgataaannnnnnnagatggttagtaatttatcaa |
100 |
Q |
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| T |
43554978 |
catctaaagttaaatctattcaattcatctaacaataataatttaaaaattagttccaattcatctgattaatttttttagatggttagtaatttatcaa |
43555077 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
43555078 |
a |
43555078 |
T |
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