View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14177_low_77 (Length: 222)
Name: NF14177_low_77
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 25179893 - 25179698
Alignment:
| Q |
18 |
catttgattttgttggcgtaaactactactcttcatgctatgtttctgatgcacctcaattaagcaatgcaaattctagctacctaacagattctctgat |
117 |
Q |
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| T |
25179893 |
catttgattttattggcataaattactactcttcatgctatgtttctgatgcacctcaattaagcaatgcaaattctagctacctaacagattctctgat |
25179794 |
T |
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| Q |
118 |
tagtttttcatgtaagcacttttagcttacttctatcttgtatttattgattttttaagcagtattataaattt-aatgatggtatattttatatt |
212 |
Q |
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| T |
25179793 |
tagtttttcatgtaagcacttttagcttactgctatcttgtatttattgattgtttaagtagtattataaatttaaatgatggtatattttatatt |
25179698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 25253038 - 25253156
Alignment:
| Q |
18 |
catttgattttgttggcgtaaactactactcttcatgctatgtttctgatgcacctcaattaagcaatgcaaattctagctacctaacagattctctgat |
117 |
Q |
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| T |
25253038 |
catttgattttattggcataaactattactcttcttgctatgcttctgatgcacctcaattaagcaatggcaaacctagctacctaactgattctctttc |
25253137 |
T |
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| Q |
118 |
tagtttttcatgtaagcac |
136 |
Q |
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| T |
25253138 |
tcgtttttcatgtaagcac |
25253156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 25168228 - 25168110
Alignment:
| Q |
18 |
catttgattttgttggcgtaaactactactcttcatgctatgtttctgatgcacctcaattaagcaatgcaaattctagctacctaacagattctctgat |
117 |
Q |
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||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||||||||| || |
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| T |
25168228 |
catttgattttattggcataaactattactcttcatgctatgcttctgatgcacctcagttaagcaatggcaaacatagctacctaacagattcactctc |
25168129 |
T |
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| Q |
118 |
tagtttttcatgtaagcac |
136 |
Q |
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| T |
25168128 |
tcgtttttcatgtaagcac |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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