View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14177_low_9 (Length: 602)
Name: NF14177_low_9
Description: NF14177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14177_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 584
Target Start/End: Complemental strand, 10626470 - 10625905
Alignment:
| Q |
20 |
atagcgcgtgaaatgttattcgcaggttacgattcagagtgttgtcatgtgtacattgtttctagaaagcacagttttggcgacggtttgcacaagcttg |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10626470 |
atagcgcgtgaaatgttatttgcaggttacgattcagagtgttgtcatgtgtacattgtttctagaaagcacagttttggcgatggtttgcacaagcttg |
10626371 |
T |
|
| Q |
120 |
ggtatgaaaggatcagcatcgacgaggtccaaaaaatgcaatgggaatcacttgaaagagagattccagcatggattaacacatttaaagaatgtgccac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10626370 |
ggtatgaaaggatcagcatcgacgaggtccaaagaatgcaatgggaatcacttgaaagagagattccaacatggattaacacatttaaagaatgtgccac |
10626271 |
T |
|
| Q |
220 |
tgtgtggttccccggagaacggaagcttgttgcttcaattttctctgaggatccatcggtggcagacacactctacaccaacctgacgcgtgtagtggtg |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10626270 |
tgtgtggttccccggagaaaggaagcttgttgcttcaattttctctgaggatccatcgatggcagacacactctacaccaacctgacgcgtgtagtggtg |
10626171 |
T |
|
| Q |
320 |
tttcagcttctcaattttgctgaaagtgtcgcgat-gcaaaacgcgctgcggagaagctctttaagtcactagacatgtatgagactttaagagatacaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
10626170 |
tttcagcttctcaattttgctgaaagtgtcgcgatggcaaaacgcgctgcggagaagctctttaagtctctagacatgtacgagactttaagagatacaa |
10626071 |
T |
|
| Q |
419 |
ttccaaacttggaaaaactcttcccaaaggacattgtcgatgaaatcaaagctgaaatgacatcagcaaagaatcgactcggagaggttgcggtgttaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10626070 |
ttccaaacttggaaaaactcttcccaaaggacattgtcgatgaaatcaaagctgaaatgacatcagccaagaatcgactcggagaggttgcggtgttaat |
10625971 |
T |
|
| Q |
519 |
attttgcgaactcgaaaactcaataaaaaatgataatggaaaaactccagttgcggggggcgcaat |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10625970 |
attttgcgaactcgaaaactcaataaaaaatgataatggaaaaaccccagttgcggggggcgcaat |
10625905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University