View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_11 (Length: 447)
Name: NF14178_high_11
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 438
Target Start/End: Complemental strand, 1435877 - 1435434
Alignment:
| Q |
7 |
agtatggctgcaacttagttttgagattaatcatgaagtttgtgcttagttttaaatataatatttaccttgctataccatatattttgttatatgaatt |
106 |
Q |
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| T |
1435877 |
agtatggctgcaacttagtttttagattaatcatgaagtttgtgcttagttttaaatataatatttaccttgctataccatatattttgttatatgaatt |
1435778 |
T |
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| Q |
107 |
tgtctaattttcttagacaaataattaatgaaattttctttaatgtttcagatacttctggtctttacctccagtgagcaagacttttggagtggcatgt |
206 |
Q |
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| T |
1435777 |
tgtctaattttcttagacaaataactaatgaaaatttctttaatgtttcagatacttctggtctttacctccagtgagcaagacttttggagtggcatgt |
1435678 |
T |
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| Q |
207 |
ttcatgacaactgctgcatattatctgaatctttatgatgcagagagcatagcactattttatggcttagtgtttaaacgacttcaggtttgtaatcaaa |
306 |
Q |
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| T |
1435677 |
ttcatgacaactgctgcatattatctgaatctttatgatgcagagagcatagcactattttatggcttagtgtttaaacgacttcaagtttgtaatccaa |
1435578 |
T |
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| Q |
307 |
gaaatttccttatccttaagcatagcactacataataatactgaaaatt------------cattcaccatttagttttcttgatcatgtaacatttttg |
394 |
Q |
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| T |
1435577 |
acactttccttatccttaagcatagcactacatactaatactgaaaattcattttctgattcattcatcatttagttttcttgatcatgtaacatttttg |
1435478 |
T |
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| Q |
395 |
tttatattttttgcaggtttggaggcttatcacaaatttcttct |
438 |
Q |
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| T |
1435477 |
tttatattttttgcaggtttggaggcttatcacaaatttcttct |
1435434 |
T |
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