View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14178_high_20 (Length: 407)

Name: NF14178_high_20
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14178_high_20
NF14178_high_20
[»] chr8 (3 HSPs)
chr8 (10-391)||(42066526-42066905)
chr8 (149-258)||(32519736-32519845)
chr8 (146-218)||(1158117-1158189)
[»] chr4 (3 HSPs)
chr4 (70-304)||(10129703-10129926)
chr4 (71-187)||(15831675-15831791)
chr4 (30-69)||(15831766-15831805)
[»] chr3 (2 HSPs)
chr3 (70-286)||(30911684-30911889)
chr3 (149-278)||(16441629-16441758)
[»] chr1 (2 HSPs)
chr1 (149-278)||(44085661-44085790)
chr1 (70-255)||(43147099-43147269)
[»] chr6 (1 HSPs)
chr6 (149-258)||(16389356-16389465)
[»] chr5 (1 HSPs)
chr5 (168-222)||(23408116-23408170)
[»] chr2 (2 HSPs)
chr2 (70-124)||(42202934-42202988)
chr2 (181-258)||(42202811-42202888)


Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 42066905 - 42066526
Alignment:
Q  10 aagaatattaaatagagaaaatagacttaattttattgatgattgtaatagagaaagtaccattgatgattctaatagagaaagtacaagatattacata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  || |||    
T  42066905 aagaatattaaatagagaaaatagacttaattttattgatgattgtaatagagaaagtatcattgatgattttaatagagaaagtacaagat--tatata 42066808  T
Q  110 ggcaaggttattctatttcctttctatcctattcttaataaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtca 209  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42066807 ggcaaggttattctacatccttcctatcctattcttaataaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtca 42066708  T
Q  210 ttccacttcttagatttagtatgatacttttgagcctctctaattcattaagctcaatctttaatctcaaatcattgtaaccactgtccttgctcataac 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42066707 ttccacttcttaggtttagtatgatacttttgagcctctctaattcattaagctcaatctttaatctcaaatcattgtaaccactgtccttgctcataac 42066608  T
Q  310 aaaaagattcgttaataatcaattttttcaagaaaacattttcagtaaaattaatcaaaacgggttatataaagataaaaat 391  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42066607 aaaaagattcgttaataatcaattttttcaaaaaaacattttcagtaaaattaatcaaaacgggttatataaagataaaaat 42066526  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 32519736 - 32519845
Alignment:
Q  149 aaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctct 248  Q
    |||||||||| ||| |||| ||||||||| | ||||||| ||| ||||| |||||||||||||| |||| |||  | ||||||||| ||||||||||||     
T  32519736 aaactagtgagtcaccaatcttctagaaccaatgagtcattactaaatggcaacatagtcattcaactttttaagtgtagtatgatccttttgagcctcc 32519835  T
Q  249 ctaattcatt 258  Q
    ||||||||||    
T  32519836 ctaattcatt 32519845  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 1158189 - 1158117
Alignment:
Q  146 aataaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtcattccacttc 218  Q
    ||||||||||||| |||||||| ||||| ||||| |||||||| || ||||| ||||| | | ||||||||||    
T  1158189 aataaactagtgagtcatcaatcttctaaaactaatgagtcaccactaaatggcaacaaatttattccacttc 1158117  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 304
Target Start/End: Original strand, 10129703 - 10129926
Alignment:
Q  70 cattgatgattctaatagagaaagtacaagatattacataggcaaggttattctatttcctttctatcctattcttaataaactagtgactcatcaatat 169  Q
    ||||||||||| |||||||| || |||||||||||| |||||||| |||||||||  ||||| ||| |           |||||||||| ||| |||| |    
T  10129703 cattgatgattgtaatagaggaaatacaagatattatataggcaaagttattctagatccttcctaac-----------aaactagtgagtcaccaatct 10129791  T
Q  170 tctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctctctaattcattaagctcaatct 269  Q
    |||||||||| ||||||||||| |||||  |||||||||||||||||| |||| | ||||| ||| ||||||  |||| ||||||||||   ||||||||    
T  10129792 tctagaactaatgagtcactactaaatggtaacatagtcattccacttgttaggtgtagtaagatccttttggccctcactaattcattggactcaatct 10129891  T
Q  270 ttaatctcaaatcattgtaaccactgtccttgctc 304  Q
    | ||||||||||||||||| ||| | |||||||||    
T  10129892 tcaatctcaaatcattgtagccaatatccttgctc 10129926  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 15831791 - 15831675
Alignment:
Q  71 attgatgattctaatagagaaagtacaagatattacataggcaaggttattctatttcctttctatcctattcttaataaactagtgactcatcaatatt 170  Q
    ||||||||||  |||||||||||||| |||| ||| |||||||| |||||||||  |  || |||  | |||| |||||||||||||| |||||||| ||    
T  15831791 attgatgattgaaatagagaaagtacgagatcttatataggcaaagttattctagattattcctagtccattcataataaactagtgagtcatcaatctt 15831692  T
Q  171 ctagaactattgagtca 187  Q
    | ||||||| |||||||    
T  15831691 ccagaactaatgagtca 15831675  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 15831805 - 15831766
Alignment:
Q  30 atagacttaattttattgatgattgtaatagagaaagtac 69  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  15831805 atagacttaattttattgatgattgaaatagagaaagtac 15831766  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 30911684 - 30911889
Alignment:
Q  70 cattgatgattctaatagagaaagtacaagatattacataggcaaggttattctatttcctttctatcctattcttaataaactagtgactcatcaatat 169  Q
    ||||||||||| |||||||| || |||||||||||| ||| |||| |||||||||  ||||| ||| |           |||||||||| ||| |||| |    
T  30911684 cattgatgattgtaatagaggaaatacaagatattatatatgcaaagttattctagatccttcctaac-----------aaactagtgagtcaccaatct 30911772  T
Q  170 tctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctctctaattcattaagctcaatct 269  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||||||| |||| | ||||| ||| ||||||  |||| ||||||||||   ||||||||    
T  30911773 tctagaactaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtaagatccttttggccctcactaattcattggcctcaatct 30911872  T
Q  270 ttaatctcaaatcattg 286  Q
    | |||||||| ||||||    
T  30911873 tcaatctcaagtcattg 30911889  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 278
Target Start/End: Complemental strand, 16441758 - 16441629
Alignment:
Q  149 aaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctct 248  Q
    |||||||||| ||| |||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||| |||| | ||||||||| |||||| |||||     
T  16441758 aaactagtgagtcaccaattttctagaaccaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtatgatccttttgggcctcc 16441659  T
Q  249 ctaattcattaagctcaatctttaatctca 278  Q
    ||||||||||   ||||||||| |||||||    
T  16441658 ctaattcattggactcaatcttcaatctca 16441629  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 44085661 - 44085790
Alignment:
Q  149 aaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctct 248  Q
    |||||||||| ||| |||| ||||||||| | ||||||||||| ||||| ||||||||||||||||||| |||| | ||||||||| |||||| |||||     
T  44085661 aaactagtgagtcaccaattttctagaaccaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtatgatccttttgggcctcc 44085760  T
Q  249 ctaattcattaagctcaatctttaatctca 278  Q
    ||||||||||   ||||||||| |||||||    
T  44085761 ctaattcattggactcaatcttcaatctca 44085790  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 255
Target Start/End: Original strand, 43147099 - 43147269
Alignment:
Q  70 cattgatgattctaatagagaaagtacaagatattacataggcaaggttattctatttcctttctatcctattcttaataaactagtgactcatcaatat 169  Q
    ||||||| ||| ||||||||||| |||||||||||| |||||||| |||||||||  ||||||||| |           |||||||||| |||| ||| |    
T  43147099 cattgattattgtaatagagaaaatacaagatattatataggcaaagttattctagatcctttctaac-----------aaactagtgagtcatgaatct 43147187  T
Q  170 tctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctctctaattc 255  Q
    |||| ||| |   ||||||||| ||||| ||   ||||||||||||||||||| | ||||||||| ||||| |||||| |||||||    
T  43147188 tctaaaaccaacaagtcactactaaatggca---tagtcattccacttcttaggtgtagtatgatcctttt-agcctccctaattc 43147269  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 258
Target Start/End: Original strand, 16389356 - 16389465
Alignment:
Q  149 aaactagtgactcatcaatattctagaactattgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctct 248  Q
    |||||||||| ||| |||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||| | ||||| ||| | ||||  ||||     
T  16389356 aaactagtgagtcaccaatcttctagaactaatgagtcactactaaatggcaacatagtcattccacttgttaggtgtagtaagatccatttggccctca 16389455  T
Q  249 ctaattcatt 258  Q
    ||||||||||    
T  16389456 ctaattcatt 16389465  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 23408170 - 23408116
Alignment:
Q  168 attctagaactattgagtcactacaaaatgacaacatagtcattccacttcttag 222  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  23408170 attctagaaccaatgagtcactactaaatgacaacatagtcattccacttcttag 23408116  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 42202988 - 42202934
Alignment:
Q  70 cattgatgattctaatagagaaagtacaagatattacataggcaaggttattcta 124  Q
    ||||||||||| ||||||||| | |||||||||||| ||||||||  ||||||||    
T  42202988 cattgatgattgtaatagagataatacaagatattatataggcaaacttattcta 42202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 42202888 - 42202811
Alignment:
Q  181 tgagtcactacaaaatgacaacatagtcattccacttcttagatttagtatgatacttttgagcctctctaattcatt 258  Q
    ||||||||||| |||||  |||||||||||| |||||||||  | ||||||||| |||||  | ||| ||||||||||    
T  42202888 tgagtcactactaaatggtaacatagtcatttcacttcttatgtgtagtatgatccttttaggtctccctaattcatt 42202811  T

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