View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14178_high_21 (Length: 403)

Name: NF14178_high_21
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14178_high_21
NF14178_high_21
[»] chr1 (3 HSPs)
chr1 (9-396)||(46679403-46679802)
chr1 (249-395)||(44782194-44782340)
chr1 (298-365)||(33773202-33773269)
[»] chr5 (8 HSPs)
chr5 (196-396)||(25725818-25726029)
chr5 (249-393)||(25502038-25502181)
chr5 (249-396)||(40382767-40382914)
chr5 (251-395)||(25506949-25507092)
chr5 (249-396)||(10410752-10410898)
chr5 (299-396)||(8081505-8081602)
chr5 (249-395)||(10412325-10412470)
chr5 (328-396)||(6742574-6742642)
[»] chr2 (13 HSPs)
chr2 (237-391)||(33187188-33187342)
chr2 (249-396)||(1015675-1015821)
chr2 (249-396)||(45035109-45035255)
chr2 (249-396)||(17308648-17308787)
chr2 (249-396)||(45033314-45033460)
chr2 (302-396)||(30191586-30191680)
chr2 (331-396)||(14007774-14007839)
chr2 (299-366)||(25302812-25302879)
chr2 (299-367)||(25306807-25306875)
chr2 (329-396)||(3372462-3372529)
chr2 (304-367)||(41602457-41602520)
chr2 (196-233)||(45033250-45033287)
chr2 (196-233)||(45035045-45035082)
[»] chr8 (8 HSPs)
chr8 (249-396)||(30634239-30634386)
chr8 (249-395)||(1175063-1175212)
chr8 (296-396)||(1173508-1173608)
chr8 (328-393)||(35674850-35674915)
chr8 (336-393)||(35673345-35673402)
chr8 (299-367)||(44687151-44687219)
chr8 (196-233)||(1174999-1175036)
chr8 (197-233)||(30634413-30634449)
[»] chr7 (2 HSPs)
chr7 (196-396)||(29924537-29924730)
chr7 (250-396)||(21464460-21464612)
[»] chr3 (9 HSPs)
chr3 (244-396)||(28133668-28133820)
chr3 (249-396)||(4602247-4602393)
chr3 (215-396)||(4609027-4609205)
chr3 (249-396)||(27682145-27682291)
chr3 (305-396)||(41874519-41874610)
chr3 (328-396)||(26667008-26667076)
chr3 (299-367)||(35244167-35244235)
chr3 (256-367)||(27972552-27972662)
chr3 (326-396)||(26317954-26318024)
[»] chr4 (5 HSPs)
chr4 (249-395)||(4847699-4847845)
chr4 (249-396)||(28395563-28395713)
chr4 (249-349)||(25054291-25054390)
chr4 (299-367)||(8005906-8005974)
chr4 (196-257)||(11809925-11809985)
[»] chr6 (4 HSPs)
chr6 (249-396)||(34350344-34350491)
chr6 (236-396)||(15688974-15689134)
chr6 (249-310)||(24544682-24544742)
chr6 (301-374)||(9373603-9373676)
[»] scaffold0570 (1 HSPs)
scaffold0570 (236-329)||(3010-3107)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 46679403 - 46679802
Alignment:
Q  9 ttttcctccacctttgtgattgtcactcctttgtgcatcatatggaatctcatcagcctattttccagcaaggtgacaacatgacaaagctcggtgcaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46679403 ttttcctccacctttgtgattgtcactcctttgtgcatcatatggaatctcatcagcctattttccagcaaggtgacaacatgacaaagctcggtgcaaa 46679502  T
Q  109 ggccagtgaagttgaaccaaaattagatagagccatggaaaacgaagcttggtgccaactatttcctaatgctcggttggagtgccttattagagtatag 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46679503 ggctagtgaagttgaaccaaaattagatagagccatggaaaacgaagcttggtgccaactatttcctaatgctcggttggagtgccttattagagtatag 46679602  T
Q  209 tgaagaagataacttggggagcaagcaaactatagtagaa------------agttagttactccaagtcactataaataagctacacctatgtactatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||| |    
T  46679603 tgaagaagataacttggggagcaagcaaactatagtagaaaattagttagggagttagttactccaagtcactataaataagctacacctatgtactact 46679702  T
Q  297 tcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46679703 tcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 46679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 249 - 395
Target Start/End: Complemental strand, 44782340 - 44782194
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44782340 agttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttagtaatgactcctagagagaattac 44782241  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatccttt 395  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  44782240 acaatctatctttccattgcatttgacctagaaccatggaatccttt 44782194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 33773202 - 33773269
Alignment:
Q  298 catcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccat 365  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||  || |||||||||||||    
T  33773202 catcatcttttatacaattgttttttagtgatgactcctagagagtattatgcattctatctttccat 33773269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 196 - 396
Target Start/End: Complemental strand, 25726029 - 25725818
Alignment:
Q  196 tattagagtatagtgaagaagataacttggggagcaagcaaactatagtagaa------------agttagttactccaagtcactataaataagctaca 283  Q
    |||||||||||||||||||||||||||||| |||||||  | |||| ||||||            |||||||||||||||||||||||||||||| ||||    
T  25726029 tattagagtatagtgaagaagataacttggagagcaagttatctat-gtagaaagttagttagggagttagttactccaagtcactataaataagttaca 25725931  T
Q  284 cctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaacc 383  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25725930 cctatgtactatttcattatcttttatacgattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaacc 25725831  T
Q  384 atggaatcctttg 396  Q
    |||||||||||||    
T  25725830 atggaatcctttg 25725818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 249 - 393
Target Start/End: Complemental strand, 25502181 - 25502038
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  25502181 agttagttactccaattcactataaataagttacatctatgtactattccat-atcttttatacaattgtttcttgataatgactcctagagagaattac 25502083  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcct 393  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  25502082 acaatctatatttccattgcatttgatctagaaccatggaatcct 25502038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 40382914 - 40382767
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||||||    
T  40382914 agttaggtactccaagtcactataaataagctacacctatatactatttcattatcttttttacaattgtttcttagtaatgattcctagagagaattac 40382815  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||| |||||||||||||||||||| ||||||| ||| |||||||||    
T  40382814 acaatttatctttccattgcatttgacctagaacaatgtaatcctttg 40382767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 251 - 395
Target Start/End: Complemental strand, 25507092 - 25506949
Alignment:
Q  251 ttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacac 350  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||| ||| |||||||||||||     
T  25507092 ttagttactccaattcactataaataagctacacctatgtactattccat-attttttatacaattgtttctttgtaatgaatcccagagagaattacat 25506994  T
Q  351 aatctatctttccattgcatttgatctagaaccatggaatccttt 395  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  25506993 aatctatctttccattgcatttgatctaaaaccatggaatccttt 25506949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 10410752 - 10410898
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |||  |||| |  |||||||||||||||||||||    
T  10410752 agttagttactccaaatcactataaataagctacacctatgtactatttca-catcttttattcatttgcatctttgggatgactcctagagagaattac 10410850  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  10410851 acaatctatctttccattgcatttgacctagaaccatggaatcctttg 10410898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 8081505 - 8081602
Alignment:
Q  299 atcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8081505 atcatcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttg 8081602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 395
Target Start/End: Original strand, 10412325 - 10412470
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||  |||| || || | || |||||| ||||||    
T  10412325 agttagttactccaaatcactataaataagctacacctatgtactatttcat-atcttttattcatttgcatctttgtgataattcttagagaaaattac 10412423  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatccttt 395  Q
    |||||||||||||| ||||||||||| ||| ||||||| ||||||||    
T  10412424 acaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 6742574 - 6742642
Alignment:
Q  328 atgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  6742574 atgactcgtagagagaaatacacaatctatctttccattgcatttgatctagaactatggaatcgtttg 6742642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 237 - 391
Target Start/End: Complemental strand, 33187342 - 33187188
Alignment:
Q  237 actatagtagaaagttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcct 336  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  33187342 actatggtagaaagttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttggtaatgactcat 33187243  T
Q  337 agagagaattacacaatctatctttccattgcatttgatctagaaccatggaatc 391  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  33187242 agagataattacacaatctatctttccattacatttgacctagaacaatggaatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 1015675 - 1015821
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||    
T  1015675 agttagttactccaaatcactataaataagccacacctatgtactattccat-atcttttatacaattgtttcttggtaacgactccaagagagaattac 1015773  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1015774 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 1015821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 45035109 - 45035255
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||||| || |||  |||| || ||||||||||||||||| ||     
T  45035109 agttagttactccaaatcactataaataagctacacctatgtaatatttcaa-atcttttattcatttgcatctttgtgatgactcctagagagaactat 45035207  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45035208 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 45035255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 17308648 - 17308787
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| ||||||||||||||  |||||| |||       ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  17308648 agttagttactccaaatcactataaataagtcacacctttgt-------cat-atcttttatacaattgtttcttggtaatgactcctagagtgaattac 17308739  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  17308740 acaatctatctttccattgcatttgatctagaacaatggaatcctttg 17308787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 45033314 - 45033460
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||| ||||| ||||||||| || |||  |||| || |||||||||||||| |||||     
T  45033314 agttagttaccccaaatcactgtaaataagctacacctatgtactaattcat-atcttttattcatttgcatctttgtgatgactcctagagaaaattat 45033412  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45033413 acaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 30191586 - 30191680
Alignment:
Q  302 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||||||||||||||||||||||||||||| |  |||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30191586 atcttttatacaattgtttcttggtaatgatttttagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttg 30191680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 14007774 - 14007839
Alignment:
Q  331 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  14007774 actcctagagagaattagacaatccatctttccattgcatttgacctagaaccatggaatcctttg 14007839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 25302812 - 25302879
Alignment:
Q  299 atcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccatt 366  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||  || ||||||||||||||    
T  25302812 atcatcttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccatt 25302879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 25306807 - 25306875
Alignment:
Q  299 atcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 367  Q
    ||||||||||||||||||||||||| || ||||||| ||||||| ||||  || |||||||||||||||    
T  25306807 atcatcttttatacaattgtttcttagtgatgactcatagagagcattatgcattctatctttccattg 25306875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 3372529 - 3372462
Alignment:
Q  329 tgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||| ||||||||||| | ||||||||||||||||| |||||| ||||||| |||||||| ||||    
T  3372529 tgactcccagagagaattatagaatctatctttccattgtatttgacctagaactatggaatcttttg 3372462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 41602457 - 41602520
Alignment:
Q  304 cttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 367  Q
    |||||||||||||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  41602457 cttttatacaattgtttcttagtgatgactcctagagagcattatgcattctatctttccattg 41602520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 45033250 - 45033287
Alignment:
Q  196 tattagagtatagtgaagaagataacttggggagcaag 233  Q
    |||||||||||||||||||||||||||||| |||||||    
T  45033250 tattagagtatagtgaagaagataacttggagagcaag 45033287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 45035045 - 45035082
Alignment:
Q  196 tattagagtatagtgaagaagataacttggggagcaag 233  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  45035045 tattagagtatagtgtagaagataacttggagagcaag 45035082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 30634386 - 30634239
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||    
T  30634386 agttagttactccaagtcactataaataagctacacctatgtactatttcattatcttttatacaattgtttcttagtaatgactcatagagagaattac 30634287  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    | |||||||||||||||||||||||| ||| |||||| ||||||||||    
T  30634286 agaatctatctttccattgcatttgacctaaaaccatagaatcctttg 30634239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 249 - 395
Target Start/End: Original strand, 1175063 - 1175212
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttgg---taatgactcctagagagaat 345  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||| | |||    
T  1175063 agttagttactccaagtcactataaataagttacacctatgtactatttcattatcttttatacaattgtttcttggtaataatgactcctagaaaaaat 1175162  T
Q  346 tacacaatctatctttccattgcatttgatctagaaccatggaatccttt 395  Q
    |||||||||||||||| |||| ||||||| |||||||||| |||||||||    
T  1175163 tacacaatctatcttttcattacatttgacctagaaccatagaatccttt 1175212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 1173508 - 1173608
Alignment:
Q  296 ttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatccttt 395  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||  ||||||||||||    
T  1173508 ttcattatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatccttt 1173607  T
Q  396 g 396  Q
    |    
T  1173608 g 1173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 35674915 - 35674850
Alignment:
Q  328 atgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcct 393  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| ||||||    
T  35674915 atgactcctagagagaattacacaatctacctttccattgcatttgacttagaaccatgcaatcct 35674850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 35673402 - 35673345
Alignment:
Q  336 tagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcct 393  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  35673402 tagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 44687151 - 44687219
Alignment:
Q  299 atcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 367  Q
    ||||||||||||||||||||||||| || |||| |||||||||| ||||  || |||||||||||||||    
T  44687151 atcatcttttatacaattgtttcttagtgatgattcctagagagcattatgcattctatctttccattg 44687219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 1174999 - 1175036
Alignment:
Q  196 tattagagtatagtgaagaagataacttggggagcaag 233  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1174999 tattagagtatagtgaagaagataacttggagagcaag 1175036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 30634449 - 30634413
Alignment:
Q  197 attagagtatagtgaagaagataacttggggagcaag 233  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30634449 attagagtatagtgaagaagataacttggagagcaag 30634413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 196 - 396
Target Start/End: Original strand, 29924537 - 29924730
Alignment:
Q  196 tattagagtatagtgaagaagataacttggg-gagcaagcaaactatagtagaaagttagttactccaagtcactataaataagctacacctatgtacta 294  Q
    |||||||||||||||||||||||||||| || |||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||||||          
T  29924537 tattagagtatagtgaagaagataactttggagagcaagttatctat-gtagaaagttagttactccaagtcactataaataagctacacctat------ 29924629  T
Q  295 tttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctt 394  Q
     || || |||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  29924630 -tttattatcttttatataattgttttttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaactatggaatcctt 29924728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 250 - 396
Target Start/End: Original strand, 21464460 - 21464612
Alignment:
Q  250 gttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgttt-----cttggtaatgactcctagag--ag 342  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||| | | |||||||| || |  |||     ||| ||||||||||||||||  ||    
T  21464460 gttagttactccaaatcactgtaaataagctacacttatgtactatttta-cttcttttattcattcattttctacctttgtaatgactcctagagagag 21464558  T
Q  343 aattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21464559 aattacacaatctatctttccattgcatttgatctagaaccatggaattctttg 21464612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 244 - 396
Target Start/End: Original strand, 28133668 - 28133820
Alignment:
Q  244 tagaaagttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagaga 343  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||| || ||||||||||||||||    
T  28133668 tagagagttagttactccaagtcactataaataagctacacctatgtactatttcaccatcttttattcaattgcatctttgtgatgactcctagagaga 28133767  T
Q  344 attacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    | |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  28133768 actacacaatttacctttccattgcatttgatctagaaccatggaatcctttg 28133820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 4602247 - 4602393
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||  |||| || ||||||| ||||||||| ||     
T  4602247 agttagttactccaaatcactataaataagctacacctatgtactatttcat-atcttttatttaattgcatctttgttatgactcatagagagaactat 4602345  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  4602346 acaatttacctttccattgcatttgatctagaaccatggaatcctttg 4602393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 215 - 396
Target Start/End: Original strand, 4609027 - 4609205
Alignment:
Q  215 agataacttggggagcaagcaaactatagtagaaagttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaa 314  Q
    ||||||||||| ||||||| ||   ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  4609027 agataacttggagagcaagtaac--ataatagaaagttagttactccaaatcactataaataagctacacctatgtactatttcat-atcttttattcaa 4609123  T
Q  315 ttgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||  |||| || |||||| |||||||||| || ||||| || ||||| ||||||||||||||||||| || ||||||||||    
T  4609124 ttgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttgatctagaacaattgaatcctttg 4609205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 27682145 - 27682291
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| |||| |||||||||| | |||||||||||||| || |||||||||| || |||  |||| || ||||||||||||||||| |||    
T  27682145 agttagttactccaaatcacaataaataagcaagacctatgtactattcca-catcttttattcatttgcatctttgtgatgactcctagagagaactac 27682243  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||    
T  27682244 acaatttacctttccattgcatttgatctagaaccatggaatcctttg 27682291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 41874519 - 41874610
Alignment:
Q  305 ttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  41874519 ttttatacaattgtttcttggtaatgactcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttg 41874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 26667076 - 26667008
Alignment:
Q  328 atgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    ||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  26667076 atgactcttagggagaattacacaatctacctttccatcgcatttgatctagaaccatgaaatcctttg 26667008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 35244167 - 35244235
Alignment:
Q  299 atcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 367  Q
    ||||||||||||| |||| |||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  35244167 atcatcttttatataattttttcttagtgatgactcctagagagcattatgcattctatctttccattg 35244235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 27972552 - 27972662
Alignment:
Q  256 tactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatct 355  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||| || || | | || || |||||||||| |||  ||||  || |||    
T  27972552 tactccaaatcactataaatcagctacaccaatgtactatttcat-atcttttattcatttctatatttgtgatgactcctaaagatcattatgcattct 27972650  T
Q  356 atctttccattg 367  Q
    |||||| |||||    
T  27972651 atcttttcattg 27972662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 26318024 - 26317954
Alignment:
Q  326 taatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||||||||||  |||| | || ||||||||||||| ||||| ||||||| |||||||||| |||||||||    
T  26318024 taatgactcctcaagagcaataaacaatctatcttttcattgtatttgatttagaaccatgaaatcctttg 26317954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 249 - 395
Target Start/End: Complemental strand, 4847845 - 4847699
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  4847845 agttagttactccaagtcactataaataagctacatctatgtactatatcactatcttatatacaattgtttcttggtaatgacttctatagagaattac 4847746  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatccttt 395  Q
    | |||||||||||||||| ||||||| ||||||||||||||||||||    
T  4847745 aaaatctatctttccattacatttgacctagaaccatggaatccttt 4847699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 28395713 - 28395563
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttct----tggtaatgactcctagagagaa 344  Q
    ||||| ||||||||| |||||||||||||||||||||  ||||||||||||| ||||||||| || || | |||    | || |||||||||||||||||    
T  28395713 agttatttactccaaatcactataaataagctacaccactgtactatttcat-atcttttattcatttctatctatctttgtgatgactcctagagagaa 28395615  T
Q  345 ttacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  28395614 ttacacaatctatctttccattgcatttgacctaaaaccatggaatcctttg 28395563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 25054291 - 25054390
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||  |||| || |||||| | ||||||||||||    
T  25054291 agttagttactccaaatcactataaataagctacacctatgtactatttca-catcttttattcaattgcatctttgtgatgacttccagagagaattac 25054389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 8005906 - 8005974
Alignment:
Q  299 atcatcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattg 367  Q
    |||||||||||| |||||||||||| || ||||||||||||||| ||||  || |||||||||||||||    
T  8005906 atcatcttttattcaattgtttctttgtgatgactcctagagagcattatgcattctatctttccattg 8005974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 11809985 - 11809925
Alignment:
Q  196 tattagagtatagtgaagaagataacttggggagcaagcaaactatagtagaaagttagtta 257  Q
    |||||||||||||||||||||||||||||| |||||||  | |||| |||||||||||||||    
T  11809985 tattagagtatagtgaagaagataacttggagagcaagttatctat-gtagaaagttagtta 11809925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 34350491 - 34350344
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttatacaattgtttcttggtaatgactcctagagagaattac 348  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  34350491 agttagttactccaaatcattataaataaactacacctatgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattac 34350392  T
Q  349 acaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
    | || |||| ||||| ||| |||||| |||||||||||||||||||||    
T  34350391 ataaactatttttccgttgtatttgacctagaaccatggaatcctttg 34350344  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 236 - 396
Target Start/End: Original strand, 15688974 - 15689134
Alignment:
Q  236 aactatagtagaaagttagttactccaagtcactataaataagctacacctatgtactattt--catcatcttttatacaattgtttcttggtaatgact 333  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||   ||| | |||||| || || | |||| || ||||||    
T  15688974 aactatagtagaaagttagttactccaaatcactataaataagctactcctatgtactattttctatc-ttttttattcatttctatctttgtgatgact 15689072  T
Q  334 cctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttg 396  Q
     |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15689073 -ctagagagaattacacaatctatctttccattgcatttgacctagaatcatggaatcctttg 15689134  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 24544682 - 24544742
Alignment:
Q  249 agttagttactccaagtcactataaataagctacacctatgtactatttcatcatcttttat 310  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  24544682 agttagttactccaaatcactataaataagctacacctatgtactatttcat-atcttttat 24544742  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 9373676 - 9373603
Alignment:
Q  301 catcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttga 374  Q
    |||||||||| || || | |||| || |||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  9373676 catcttttattcatttatatctttgttatgactcctatagaaaattacacattctatctttccattgcatttga 9373603  T

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Target: scaffold0570 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 3107 - 3010
Alignment:
Q  236 aactatagtagaaagttagttactccaagtcactataaataagctacacctatgtactatttcatca----tcttttatacaattgtttcttggtaat 329  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||  |    |||||||||||||||||||||||||||    
T  3107 aactatagtagaaagttagttactccaagtcactataaatatgctacaccgatgtactatttcactatctttcttttatacaattgtttcttggtaat 3010  T

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