View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_29 (Length: 320)
Name: NF14178_high_29
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 42686164 - 42685976
Alignment:
| Q |
116 |
tttcaaccctaaagatgaatcacatgcaagctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaagaaaaattcta |
215 |
Q |
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| T |
42686164 |
tttcaaccctaaagatgaatcacatgcaagctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaagaaaaattcta |
42686065 |
T |
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| Q |
216 |
acctgaataggtgagaagtgatcagcgtatgatttacgaaaatcattacgattttcagatccgcaaaattgttgaggttgcaaacaact |
304 |
Q |
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| T |
42686064 |
acctgaataggtgagaagtgatcagcgtatgatttacgaaaatcattacgattttcagatccgcaaaattgttgaggttgcaaacaact |
42685976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 42686274 - 42686191
Alignment:
| Q |
6 |
gaacacaaggaaaatagctagtaattaacataagttgaaaatatattgtctgaagtatctatagttttacctatctatactttg |
89 |
Q |
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| T |
42686274 |
gaacacaaggaaaatagctagtaattaacataagttgaaaatatattgtctaaagtatctatagttttacctatctatactttg |
42686191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 42683421 - 42683319
Alignment:
| Q |
133 |
aatcacatgcaagctcaaattttgatgacaacacataaaagcgatcaacaacgaaaacataaatttaataaaga-----aaaattctaacctgaataggt |
227 |
Q |
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| T |
42683421 |
aatcacgtgcaagctcaaattttgatgac-acccataaaagcaatcaaca---agaacataaatccaataaagaaaaataaaattctaacctgaataggt |
42683326 |
T |
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| Q |
228 |
gagaagt |
234 |
Q |
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| T |
42683325 |
gagaagt |
42683319 |
T |
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