View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_3 (Length: 637)
Name: NF14178_high_3
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 2426956 - 2426663
Alignment:
| Q |
9 |
agcttttgatctcgacgagtccaaccggttcgacacactttgggagcatcaggatttgatagaacagctgaagatggaattgaagaaggttaaagctact |
108 |
Q |
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| T |
2426956 |
agcttttgatctcgatgagtccaaccggttcgacacactttgggagcatcaggatttgatagaacagctgaagatggaattgaagaaggttaaagctact |
2426857 |
T |
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| Q |
109 |
ggtttacctactatctttgaggattctgagtcgccacggattatggaagatttgaagccatggaaaattgatgaaaaatttccgcaaggtagcagtacta |
208 |
Q |
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| T |
2426856 |
ggtttacctactatctttgaggattctgagtcgccacggattatggaagatttgaagccatggaaaattgatgaaaaatttcagcaaggtagcagtacta |
2426757 |
T |
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| Q |
209 |
cgaatgagcttccaaagttctacagaagttacagagaaggaatgagaaaatttgatatcttgaattaccaaaagatgtatgctttaggtaagtg |
302 |
Q |
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| T |
2426756 |
caaatgagcttccaaaattctacagaagttacagagaaagaatgagaaaatttgatatcttgaattatcaaaagatgtatgctttaggtaagtg |
2426663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 367 - 637
Target Start/End: Complemental strand, 2426598 - 2426329
Alignment:
| Q |
367 |
ttcaatgttttaaaactcgaatcaaatagactcttcaactggttgaatcatgaaccgacattgtctatggttcgattatttgagcagttcgactgcggtt |
466 |
Q |
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| T |
2426598 |
ttcaatgtttgaaaaatcaaatcgaatcgactcttcatccggttgaattatgaaccgacattgtctacagttcgattatttgagcagttcgacagcagtt |
2426499 |
T |
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| Q |
467 |
tttgccccggtttgaacattttaaagtcattgaaccatgacctagaggtctcgcctggtcgatgattggtttagttcttaaagcattgattttacttgtt |
566 |
Q |
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| T |
2426498 |
ttt-ccctagttcgaacgttttaaagccattgaaccatgacctagaggtctcgccatgtcgatgtctagttcggttcttaaaccattgattttacttgtt |
2426400 |
T |
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| Q |
567 |
tgcttccttgttcatgacaatttcatttaacatccttgatcatcaaaacctactttatctaaaccattaaa |
637 |
Q |
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| T |
2426399 |
tgcttccttgttcacgacaatttcatttaacatccttgatcatcaaaacctactttatctaaaccattaaa |
2426329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 27291873 - 27291941
Alignment:
| Q |
400 |
ttcaactggttgaatcatgaaccgacattgtctatggttcgattatttgagcagttcgactgcggtttt |
468 |
Q |
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| T |
27291873 |
ttcaattggttgaaccatgaactgacattgtctacggttcagttatttgagtggttcgactgcagtttt |
27291941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 4536338 - 4536387
Alignment:
| Q |
400 |
ttcaactggttgaatcatgaaccgacattgtctatggttcgattatttga |
449 |
Q |
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| T |
4536338 |
ttcaactagttgaatgttgaaccgatattgtctatggttcggttatttga |
4536387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 10479899 - 10479847
Alignment:
| Q |
400 |
ttcaactggttgaatcatgaaccgacattgtctatggttcgattatttgagca |
452 |
Q |
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| T |
10479899 |
ttcaactggttgaattatgaaccaagattgtttaaggttcaattatttgagca |
10479847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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