View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_33 (Length: 307)
Name: NF14178_high_33
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_33 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 46 - 307
Target Start/End: Original strand, 29448774 - 29449035
Alignment:
| Q |
46 |
gtaagtggttttttaaccaaattaataggattaatatggccatttgtatttatgatttgaaaaataattctagttacttataatttggctaaacatttaa |
145 |
Q |
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| T |
29448774 |
gtaagtggttttttaaccaaattaataggattaatatggtcatttgtatttatgatttgaaacataattctagttacttataatttggctaaacatttaa |
29448873 |
T |
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| Q |
146 |
caggtatttccataggttattacaaacccgtcatatatttctcatttcagaacaattttcgcaaggtgaggtgtcagaggtgctttcaagaagcaactgt |
245 |
Q |
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| T |
29448874 |
caggtatttccataggttattacaaacccgtcatatatttctcatttcagaacaattttcgcaaggtgaggtgtcagaggtgctttcaagaagcaaatgt |
29448973 |
T |
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| Q |
246 |
aagacctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtactacacaaa |
307 |
Q |
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| T |
29448974 |
aagacctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtactacacaaa |
29449035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 55 - 300
Target Start/End: Original strand, 29456733 - 29456979
Alignment:
| Q |
55 |
tttttaaccaaattaataggattaatatggccatttgtatttatgatttgaaaa-ataattctagttacttataatttggctaaacatttaacaggtatt |
153 |
Q |
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| T |
29456733 |
tttttaaacaaattaataggcttactatggcactttgtatttatgatttgaaaacataatgctagttatttataatttggttaaacatttaaaagg-att |
29456831 |
T |
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| Q |
154 |
tccataggttattacaaacccgtcatatatttctcattt-cagaacaattttcgcaaggtgaggtgtcagaggtgctttcaagaagcaactgtaagacct |
252 |
Q |
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| T |
29456832 |
tccataggttattacgaacccatcatatatttctcatttgaaaaaaaaaattggcaaggtgaggtgtcagaggtgctttcaagaagcacaggtaagacca |
29456931 |
T |
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| Q |
253 |
ttttaaaagaattaatctcaacttccattttaaagaagcaaaggtact |
300 |
Q |
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| T |
29456932 |
tttttaaagaattaatctcaacttccattttaaagaagcaaaggtact |
29456979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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