View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_46 (Length: 237)
Name: NF14178_high_46
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 34260166 - 34259947
Alignment:
| Q |
17 |
agaccgtatattttgcagtgtatggggtgtgggacccaaactgtaaaaggcgttaaaattctcttgattctatttctatttctagttgtttccgaattta |
116 |
Q |
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| T |
34260166 |
agaccgtatattttgcagtgtatggggtgtgggacccaaactgtaaaagacattaaaattctcttgattctatttctatttctagttgtttccgaattta |
34260067 |
T |
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| Q |
117 |
tcaaaagtgtgctaagaaagtttttgtgtcgtgtttcaagtttaggagacatgtttggttttggcgggaataatttaggcataagaccatttctttttta |
216 |
Q |
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| T |
34260066 |
tcaaaagtgtgctaagaaagtttttgttttgtgtttcaagtttaggagacatgtttggttttggcgggaatgatttagacataagaccatttctttttta |
34259967 |
T |
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| Q |
217 |
tggactcgtgtttaaaatta |
236 |
Q |
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|||||||| ||||||||||| |
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| T |
34259966 |
tggactcgcgtttaaaatta |
34259947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 34268465 - 34268368
Alignment:
| Q |
96 |
ttctagttgtttccgaatttatcaaaagtgtgctaagaaagtttttgtgtcgtgtttcaagtttaggagacatgtttggttttggcgggaataatttag |
194 |
Q |
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|||||||||||||| |||| |||||||| || ||| |||||||| |||| ||||||||| | |||| |||| ||||||||||||||||||||||||| |
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| T |
34268465 |
ttctagttgtttccaaattgatcaaaagggtactagaaaagtttt-gtgttgtgtttcaaatctaggccacatatttggttttggcgggaataatttag |
34268368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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