View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_53 (Length: 220)
Name: NF14178_high_53
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_53 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 38122235 - 38122419
Alignment:
| Q |
18 |
gaagaggataagaaaatcacaccgttcgaagacttataaagttgaaatcaactttgctaaggaaattcctctgcaggccattgccaatgccttaaagggg |
117 |
Q |
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| T |
38122235 |
gaagaggataagaaaatcataccgttcgaagacttataaagttgaaatcaactttgctaaggaaattcctctgcaggccattgccaatgccttaaagggg |
38122334 |
T |
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| Q |
118 |
catgaagctgagaattatcaagaagccattagggttcttgatattatcttgagacaacatgctgccaaacagtgcgtgcttgcat |
202 |
Q |
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| T |
38122335 |
catgaagctgagaattatcaagaagccattagggttcttgatattatcttgagacaacattctgccaaacagtgcgtgcttgcat |
38122419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 38113753 - 38113913
Alignment:
| Q |
30 |
aaaatcacaccgttcgaagacttataaagttgaaatcaactttgctaaggaaattcctctgcaggccattgccaatgccttaaaggggcatgaagctgag |
129 |
Q |
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| T |
38113753 |
aaaatcacaccgatcaaagacctacaaagttgaaatcagctttgcctcaaagatccctctgcaggccatcgccaatgccttaaaagggcatgaaactgag |
38113852 |
T |
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| Q |
130 |
aattatcaagaagccattagggttcttgatattatcttgagacaacatgctgccaaacagt |
190 |
Q |
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| T |
38113853 |
aattatcaagaagcgattagggttcttgacattatcttgaggcaacatgctgccaaacagt |
38113913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 14914674 - 14914817
Alignment:
| Q |
52 |
tataaagttgaaatcaactttgctaaggaaattcctctgcaggccattgccaatgccttaaaggggcatgaagctgagaattatcaagaagccattaggg |
151 |
Q |
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| T |
14914674 |
tataaagttgaaatcaactatgcatcaaaaattcctctgcaggccattgacagagcctttaagggtcaagaaaccgagaattatcaagaagccctaaggg |
14914773 |
T |
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| Q |
152 |
ttcttgatattatcttgagacaacatgctgccaaacagtgcgtg |
195 |
Q |
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| T |
14914774 |
ttcttgatactatcttgagacaacatgctgccaaacagtgcgtg |
14914817 |
T |
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