View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_58 (Length: 215)
Name: NF14178_high_58
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_58 |
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| [»] scaffold0104 (2 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: scaffold0104 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: scaffold0104
Description:
Target: scaffold0104; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 8332 - 8213
Alignment:
| Q |
13 |
attattctaaaacatttagaatttgtttgtactattagaaaattatttgagattacaagctctagtttagccaagtaaaacaagcaatccaaataaaaca |
112 |
Q |
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| T |
8332 |
attattataaaacatttagcatttgtttgtactattagaatattatttgatattacaagctgttgtatagccaaataaaacaagcaatccaaataaa--a |
8235 |
T |
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| Q |
113 |
caaccaatttggcaaaaaacat |
134 |
Q |
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|||||||||||||||||||||| |
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| T |
8234 |
caaccaatttggcaaaaaacat |
8213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0104; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 19003 - 18884
Alignment:
| Q |
13 |
attattctaaaacatttagaatttgtttgtactattagaaaattatttgagattacaagctctagtttagccaagtaaaacaagcaatccaaataaaaca |
112 |
Q |
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| T |
19003 |
attattataaaacatttagcatttgtttgtactattagaatattatttgatattacaagctgttgtatagccaaataaaacaagcaatccaaataaa--a |
18906 |
T |
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| Q |
113 |
caaccaatttggcaaaaaacat |
134 |
Q |
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| T |
18905 |
caaccaatttggcaaaaaacat |
18884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 19847279 - 19847374
Alignment:
| Q |
38 |
tttgtactattagaaaattatttgagattacaagctctagtttagccaagtaaaacaagcaatccaaataaaacacaaccaatttggcaaaaaacatt |
135 |
Q |
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| T |
19847279 |
tttgtactactagaatattatctgagattacaagctgtagtatagccaaataaaacaagcaatccaaataaa--acaaccaatttggcaaaaaacatt |
19847374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 15994094 - 15994128
Alignment:
| Q |
162 |
aagaaattacattagaagcaacaatgagaccatta |
196 |
Q |
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| T |
15994094 |
aagaaattacattagaagcaacaatgagaccatta |
15994128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 15991213 - 15991151
Alignment:
| Q |
38 |
tttgtactattagaaaattatttgagattacaagctctagtttagccaagtaaaacaagcaat |
100 |
Q |
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||||||||| ||| | ||||| |||||||||||||| |||| ||||||| |||||||| |||| |
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| T |
15991213 |
tttgtactactaggatattatctgagattacaagctgtagtatagccaaataaaacaaccaat |
15991151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 17227003 - 17227058
Alignment:
| Q |
13 |
attattctaaaacatttagaatttgtttgtactattagaaaattatttgagattac |
68 |
Q |
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|||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
17227003 |
attattataaaacatttaggatttgtttgtactattagaatattatttgagattac |
17227058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 3018 - 3073
Alignment:
| Q |
13 |
attattctaaaacatttagaatttgtttgtactattagaaaattatttgagattac |
68 |
Q |
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|||||| |||||||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
3018 |
attattataaaacatttaggatttctttgtactattagaatattatttgagattac |
3073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 7666 - 7612
Alignment:
| Q |
13 |
attattctaaaacatttagaatttgtttgtactattagaaaattatttgagatta |
67 |
Q |
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|||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
7666 |
attattataaaacatttaagatttgtttgtacttttagaatattatttgagatta |
7612 |
T |
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