View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14178_high_6 (Length: 609)
Name: NF14178_high_6
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 31789721 - 31790318
Alignment:
| Q |
1 |
gacgcaagtaacacagtgaccaaagtagagcaactatcctttctgtttacctcgaatggtttttaggtaatgttggaccacacctatattgaggagcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31789721 |
gacgcaagtaacacagtgaccaaagtagagcaactatcctttctgtttacctcgaatggtttttaggtaatgttggaccacacctatattgaggagcttc |
31789820 |
T |
|
| Q |
101 |
aatgggnnnnnnnn-gggttgcattgcagctttttgattagtttataactttgatcatgtggctcctactccaaggaagtcaataaatggaattgcatct |
199 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31789821 |
aatggaaaaaaaaaagggttgcattgcagctttttgattagtttataactttgatcatgtggctcctactccaaggaagtcaataaatggaattgcatct |
31789920 |
T |
|
| Q |
200 |
gaaggagggggattactcatcagaacttgatctctgtgattttctgctgctgctgccactgatgatagtgaaacttcactgcctaatgttgttgctgctg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31789921 |
gaaggagggggattactcatcagaacttgatctctgtgattttctgctgctgctgccactgatgatagtgaaacttcactgcctaatgttgttgctgctg |
31790020 |
T |
|
| Q |
300 |
tggtggaaatatttgatgttaaactgtaaaaattgttgttttgttgttgcattggcatcatatattgtggatattcatggtagaaaccacttggtgttgg |
399 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31790021 |
tggtggaaatatttgatgtgaaactgtaaaaattgttgttttgttgttgcattggcatcatatattgtggatattcatggtagaaaccacttggtgttgg |
31790120 |
T |
|
| Q |
400 |
tgttggttgattttcatgtaaatcacttggcctatcccagcttctcatttggctataatactcatttcttctacctcctgaaaatccaatccatttcaag |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31790121 |
tgttggttgattttcatgtaaatcacttggcctatcccagcttctcatttggctataatactcatttcttctacctcctgaaaatccaatccatttcaag |
31790220 |
T |
|
| Q |
500 |
aaaacattaatgttataaattctaatcnnnnnnnac------aaagaaaaagtaacctgatttgtgcagatttaagaaagggatagttatattaatgt |
591 |
Q |
| |
|
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31790221 |
aaaacattaatattataaattctaatctttttttacaaagaaaaagaaaaagtaacctgatttgtgcagatttaagaaagggatagttatattaatgt |
31790318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University