View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_60 (Length: 210)
Name: NF14178_high_60
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 16164783 - 16164945
Alignment:
| Q |
35 |
taccttaaattatttgggtttgttccttataatttcaacagagaaactgtaatggggataacacaattgaaagcgaagcttgtcttttaccctcata-tt |
133 |
Q |
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| T |
16164783 |
taccttaaattatttgggtttcttccttataatttcaacagagaaactgtaatggggataacggaattgaaagcgaagcttgtcttttaccctcatattt |
16164882 |
T |
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| Q |
134 |
gcctttgcttgatcaagataatcaatccaacctttatacaaactaatcttagaaggtgtagat |
196 |
Q |
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| T |
16164883 |
gcctttgcttgatcaagataatcaatccaacctttatacaaactaatcttagaaggtgtagat |
16164945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 188
Target Start/End: Original strand, 17050277 - 17050405
Alignment:
| Q |
61 |
ttataatttcaacagagaaactgtaatggggataacacaattgaaagcgaagcttgtcttttaccctcatattgc-ctttgcttgatcaagataatcaat |
159 |
Q |
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| T |
17050277 |
ttataatttcaacagaaaaactgtaatgtgcttagtggaattgaaaacgaagtttgtcttttaaggtcatatttttctttgcttcatcaagataatcaat |
17050376 |
T |
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| Q |
160 |
ccaacctttatacaaactaatcttagaag |
188 |
Q |
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| T |
17050377 |
ccagcctttatacaaactaatctttgaag |
17050405 |
T |
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