View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_7 (Length: 594)
Name: NF14178_high_7
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 16 - 581
Target Start/End: Complemental strand, 39110430 - 39109865
Alignment:
| Q |
16 |
agaaagatcctaacaatggtcgattagtatctttataggcctcaagttgtagcttcaaagcttccatatcaagcaaccctttatcatctaagccaatctc |
115 |
Q |
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| T |
39110430 |
agaaagatcctaacaatggtcgattagtatctttataggcctcaagttgtagcttcaaagcttccatatcaagcaaccctttatcatctaagccaatctc |
39110331 |
T |
|
| Q |
116 |
tacaacctctgccaaactctgcctccaagaaagtagatttgaatggtgctcatgtggtcctacaaaaaccacccatctttcttctttgctaaggctattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39110330 |
tacaacctctgccaaactctgcctccaagaaagtagatttgaatggtgctcatgtggtcctacaaaaaccacccatctttcttctttgctaaggctattc |
39110231 |
T |
|
| Q |
216 |
aacatactttccctcaaaatagaaggcaatgcaattaccattacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcat |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39110230 |
aacatactttccctcaaaatagaaggcactgcaattaccattacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcat |
39110131 |
T |
|
| Q |
316 |
catcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtatcatttttgttgttctgcttcccacataactgtcgcaagtatgagtatt |
415 |
Q |
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| T |
39110130 |
catcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtagcatttttgttgttctgcttcccacataactgtcgcaagtatgagtatt |
39110031 |
T |
|
| Q |
416 |
ccctgtccaagaataacaaggctaaaagagatgctcacacattaatattttttagtctcttgtcttctataattttctccatcaacctaaatgctttggt |
515 |
Q |
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| T |
39110030 |
ccctgtccaagaataacaaggctaaaagagatgctcacacattaatattttttagtctcttgtcttctataattttctccatcaacctaaatgctttggt |
39109931 |
T |
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| Q |
516 |
tgcaaatcatcaattttggtctctttattagaggaagttttggttggtgacaactatttagacata |
581 |
Q |
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| T |
39109930 |
tgcaaatcatcaattttggtctctttattagaggaagttttggttggtgacaactatttggacata |
39109865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 39101321 - 39100922
Alignment:
| Q |
16 |
agaaagatcctaacaatggtcgattagtatctttataggcctcaagttgtagcttcaaagcttccatatcaagcaaccctttatcatctaagccaatctc |
115 |
Q |
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|||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |
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| T |
39101321 |
agaaagatcccaacaagggtcgattggtatctttatatgcctcaagttgtagcttcaaagcttccatatcaagcaacccttgatcatcaaggccaatctc |
39101222 |
T |
|
| Q |
116 |
tacaacctctgccaaactctgcctccaagaaagtagatttgaatggtgctcatgtggtcctacaaaaaccacccatctttcttctttgctaaggctattc |
215 |
Q |
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||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| || |
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| T |
39101221 |
taccacctcagccaaactctgcctccaagaaagtatatttgaatggtgctcatagggtccaacaaaaaccacccatctttcttcttcgctaaggcacctc |
39101122 |
T |
|
| Q |
216 |
aacatactttccctcaaaatagaaggcaatgcaattaccattacttcttgaagtcttttgatggatgcagttgtgcctgagccacagaagatgattgcat |
315 |
Q |
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||||| ||||| |||||||||||||| | | ||| |||||||||||||||| || ||||||| ||| |||| ||| ||||| || | |||| ||||| |
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| T |
39101121 |
aacattctttctctcaaaatagaagggacaactattcccattacttcttgaagcctcttgatggctgccgttgcgcccgagccgcatagcatgagtgcat |
39101022 |
T |
|
| Q |
316 |
catcttctccgccacctaagcatttcttaatgtactcagttgcttcatgtatcatttttgttgttctgcttcccacataactgtcgcaagtatgagtatt |
415 |
Q |
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| T |
39101021 |
cgtcttccccaccacctaagcattttttaatgtacttggttgcttcatgtaccatttttgttgtcctgtttccaacgtaactctcacaagtatgggtatt |
39100922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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