View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_high_8 (Length: 477)
Name: NF14178_high_8
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Complemental strand, 1989975 - 1989528
Alignment:
| Q |
12 |
catcatcacctcagctgcccctaacctcacgaaagaacatgtaatgcttgtccactcctcttaaataattattattttaagctaaataaaaaacaattac |
111 |
Q |
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| T |
1989975 |
catcatcacctcagctgcccctaacctcacgaaagaacatgtaatgcttgtccactcctcttaaataattattatttaaagctaaataaaaaacaattac |
1989876 |
T |
|
| Q |
112 |
tactagcatgtcttaatcaaaataaagaaatagagaacagtgttttagatacgttcccaaatgttgctttcaacagtcacaaatagtagaaaattatata |
211 |
Q |
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| T |
1989875 |
tactagcatgtcttaatcaaaataaagaaatagaggacagtgttttagatacgttcccaaatgttgctttcaacagtcacaaatagtagaaaattatata |
1989776 |
T |
|
| Q |
212 |
aataaacatctcaaaagaaaacaacaacataaataatcaatcactttcctccatcaacatctaagacccgtgtggtttggacggtttctaattcttatgg |
311 |
Q |
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| T |
1989775 |
aataaacatctcaaaagaaaacaacaacataaataatcaatcactttcctccatcaacatctaagacccgtgtggtttggacggtttctaattcttatgg |
1989676 |
T |
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| Q |
312 |
gttttatcaaaagctcaatacacaaacaaatctttcaaacatatatcataaaccccaaagtaggaaaagacaaaccatgtgaggagtgatgatattgact |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1989675 |
gttttatcaaaagctcaatacacaaacaaatctttcaaacatatatcataaacaccaaagtaggaaaagacaaaccatgtgaggagtgatgatattgact |
1989576 |
T |
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| Q |
412 |
atagtgtatgctattccatttctaaagtgggtttggaatgtgacatat |
459 |
Q |
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| T |
1989575 |
atagtgtatgctattccatttctaaagtgggtttggaatgtgacatat |
1989528 |
T |
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