View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_11 (Length: 454)
Name: NF14178_low_11
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 3 - 440
Target Start/End: Complemental strand, 20715283 - 20714845
Alignment:
| Q |
3 |
gttacatgtttctttatgtagccactctccaagagtacgacaattatcttcaacaaattctttgttatgcgatgattcttccaccatttgggaaaacatt |
102 |
Q |
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| T |
20715283 |
gttacatgtttctttatgtagccactctcctagagtacgacaattatcttcaacaaattctttgttgtgcaaagattcttccaccatttgggaaaacatt |
20715184 |
T |
|
| Q |
103 |
ctctcctaaaatatataaattgcatggttattttatagtatatgacatgaaaaaagaa-ggttcaattttccattttttagactattttatgtttatgtg |
201 |
Q |
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| T |
20715183 |
ctctcctaaaatatataaattgcatggttattttttagtatatgacatgaaaaaagaaaggttcaattttccattttttagactattttatgtttatgtg |
20715084 |
T |
|
| Q |
202 |
aaatgatatgcgattaccttttgcgaagaagagtattgcctcatgcggtctcttttgacaatagcctcttgctttcttaaccatatggcttcaatgtctt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20715083 |
aaatgatatgcgattaccttttgcgaagaagagtattgcctcatgcggtctcttttgacaatagcctcttgctttcttaaccatatggcttcaatgtctt |
20714984 |
T |
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| Q |
302 |
ctctcgagtgtgagctacaattccaagttctttgactatggagctcatgctgcaaaaattcttgagttgattatatatatcatgagggttgctcaaattt |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20714983 |
ctctcgagtgtgagctacaattccaagttctttgactatggagttcaggctgcaaaaattcttgagttgattatatatatcatgagggttgctcaaattt |
20714884 |
T |
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| Q |
402 |
aatattagagatgtaattagttagtatccacacaaaaaa |
440 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
20714883 |
aatattagagatgtaattagttagtatcgacacaaaaaa |
20714845 |
T |
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