View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_12 (Length: 453)
Name: NF14178_low_12
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 35321216 - 35320932
Alignment:
| Q |
9 |
aggcaagggggacaagtagaggattatatggaaggtgatagtgccaattttttaacttgacatgtgtggtcacactcattgttgcattcatgcaagacaa |
108 |
Q |
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| T |
35321216 |
aggcaagggggacaagtagaggattatatggaaggtgatagtgccaattttttaacttgacatgtgtggtcacactcattgttgcattcatgcaagacaa |
35321117 |
T |
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| Q |
109 |
ccattcaaattgtccacagccacatgatttttatttgaataatatatgattaaagtttagaactaattgccaatgaattgctccaaaggcctacataatg |
208 |
Q |
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| T |
35321116 |
ccattcaaattgtccacagccacatgatttttatttgaataatatatgattaaagtttagaactaattgccaatgaattgctccaaaggcctacataatg |
35321017 |
T |
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| Q |
209 |
ttaggaagaacaaaacataataatatactaggtggaaaaacaaaagataatggacaccgtatcatatttatataatattttacat |
293 |
Q |
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| T |
35321016 |
ttaggaagaacaaaacataataatatattaggtggaaaaacaaaagaaaatggacaccgtatcatatttgaataatattttacat |
35320932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 35320846 - 35320779
Alignment:
| Q |
379 |
aaagttgatgaaaaatttagatgtggtttagctatattcacaaaaaattatgaaaagtcttatggttt |
446 |
Q |
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| T |
35320846 |
aaagttgatgaaaaatttagatgtggtttagctatattcacaaaaaattatgaaaagtcttatggttt |
35320779 |
T |
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