View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14178_low_14 (Length: 437)
Name: NF14178_low_14
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 43 - 434
Target Start/End: Complemental strand, 9750701 - 9750310
Alignment:
| Q |
43 |
cttatcttcatctactttatcaataaccctaaatggagtacaacaaggatattttccttgttcaaggggtatcaggaagagagaccccttggatcccttt |
142 |
Q |
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| T |
9750701 |
cttatcttcatctactttatcaataaccctaaatggagtacaacaaggatatttttcttgttcaaggggtatcaggcagagagaccccttggatcccttt |
9750602 |
T |
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| Q |
143 |
ttcgttgtttggcagaagaagctcttagcatagggataacaaagttggtggatgatggaaaggtgaagcaaattacaggatctaaaaacagccaagttcc |
242 |
Q |
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| T |
9750601 |
ttctttgtttggcagaagaagctcttagcatagggataacaaagttggtggatgatggaaaggtgaagcaaattacaggatctaaaaacagccaatttcc |
9750502 |
T |
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| Q |
243 |
atcccattatttcaaggggaactttgagagcctagaagctttgtgagatttatttacaaagtatgctaacagtgttggttaagtgataaataacaggaag |
342 |
Q |
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| T |
9750501 |
atcccattatttcaaggggaactttgagagcctagaagctttgtgagatttatttacaaagtatgctaatagtgttggttaagtgataaatagcatgaag |
9750402 |
T |
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| Q |
343 |
tcaactatttatgcaggaggaatctcaccaacaagactcgaaaatatcatcaacttactcggattctatattgactctttaccacttaacta |
434 |
Q |
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| T |
9750401 |
tcaactatttatgcaggaggaatctcaccaacaagactccaaaatatcatcaacttactaggattctatattgactctttaccacttaacta |
9750310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 3564340 - 3564226
Alignment:
| Q |
287 |
gagatttatttacaaagtatgctaacagtgttggttaagtgataaataacaggaagtcaactatttatgcaggaggaatctcaccaacaagactcgaaaa |
386 |
Q |
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||||||| ||||||||||||||||| |||| | || ||||||||| |||||| ||||| |||||| | || |||||||||||||| |||||| |||| |
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| T |
3564340 |
gagatttgtttacaaagtatgctaatagtgctagtcaagtgataagctgcaggaaatcaacaatttattctggtggaatctcaccaactagactccaaaa |
3564241 |
T |
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| Q |
387 |
tatcatcaacttact |
401 |
Q |
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||||||||| |||| |
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| T |
3564240 |
catcatcaacctact |
3564226 |
T |
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