View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14178_low_15 (Length: 434)
Name: NF14178_low_15
Description: NF14178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14178_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 77 - 421
Target Start/End: Complemental strand, 53268364 - 53268024
Alignment:
| Q |
77 |
ctacaaataccaaaaaacgatttagacaactcattatactccatctgatccttaattataaaaataaacaaatcgttttataaatttattgaataacttg |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53268364 |
ctacaaataccaaaaaacgatttagacaaatcattatactccatctgatccttaattataaaaataaacaaa-agttttataaatttattgaataacttg |
53268266 |
T |
|
| Q |
177 |
tatatggtatttttaaaattgtttaattaattaaaaaaatgannnnnnnncttaaaatgagacccgaggaannnnnnnnnnnnnnctttaagtcttatct |
276 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53268265 |
tatatggtatttttaaaattatttaattaattaaaaaaatgattttttttcttaaaatgagacccgaggaa----ttttttttttctttaagtcttatct |
53268170 |
T |
|
| Q |
277 |
atgtttagtgtgggatt-cnnnnnnnntgcaagtcttatctacgtttagttttttaccaagaaaattttcttaccaacaaagccatatccacaaggttta |
375 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53268169 |
atgtttagtgtgggattaaaaaaaaaatgcaagtcttatctacgtttagtgttttaccaagaaaattttcttaccaacaaagccatatccacaaggttta |
53268070 |
T |
|
| Q |
376 |
aacaatgaactccgaagcttagtgaagcctggtgatcaatattctt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53268069 |
aacaatgaactccgaagcttagtgaagcctagtgatcaatattctt |
53268024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 53268424 - 53268391
Alignment:
| Q |
19 |
attgttttatttgtttatggaaagtacaatcgtg |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
53268424 |
attgttttatttgtttatggaaagtacaatcgtg |
53268391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University